[go] Do you upgrade InterPro2GO IEA annotations to ISS?

[David Hill]

Emily,

MGI does as ZFIN does. We delete and reload once a week with the IEA 
evidence code.

David

Doug howe wrote:
> Hi Emily,
>  ZFIN applies the interpro2go translation table whenever we refresh 
> our data from Uniprot.  We do not evaluate these, they get IEA, and 
> the InterPro ID in the 'with' field.  We have an internal pub that 
> describes this process.
> -Doug
>
> E Dimmer wrote:
>> Hi,
>>
>> A question for those GO annotation groups that manually assess 
>> InterPro2GO 'IEA' predictions, and when appropriate, convert them 
>> into manual ISS annotations.
>>
>> I would be very grateful if you could let me know what criteria your 
>> group uses to evaluate InterPro2GO annotations. What data sources do 
>> you look at to confirm whether these electronic predictions are 
>> correct and what information does your final annotation include? 
>> (i.e. I assume that the InterPro ID would go into the 'with' column, 
>> but what would be cited in the reference column - do you have a GO 
>> reference?), also how long does this process take? Am I right in 
>> thinking that S. Pombe and DictyBase groups carry out these kinds of 
>> annotations?
>>
>> I have just been asked this by a group who are considering whether 
>> they could carry out this kind of assessment while annotating their 
>> new genome.
>>
>> Thanks,
>> Emily
>>