[go] Do you upgrade InterPro2GO IEA annotations to ISS?

[Petri, Victoria]

Hi Emily,

We bring in the InterPro IEA's electronically. They stay as they are -
IEAs and we have an internal reference for them. New uploads replace
previous ones.

Victoria

Victoria Petri, Ph.D.
Research Scientist
Rat Genome Database 
(http://rgd.mcw.edu)
Bioinformatics Program
Human and Molecular Genetics Center
Medical College of Wisconsin 
8701 Watertown Plank Road, Milwaukee, WI 53226
(414) 456-7507
Fax (414) 456-6595 
vpetri at mcw.edu
vpetri at mail.brc.mcw.edu
 
-----Original Message-----
From: owner-go at genome.stanford.edu [mailto:owner-go at genome.stanford.edu]
On Behalf Of E Dimmer
Sent: Wednesday, October 10, 2007 10:55 AM
To: GO mailing list
Subject: [go] Do you upgrade InterPro2GO IEA annotations to ISS?

Hi,

A question for those GO annotation groups that manually assess 
InterPro2GO 'IEA' predictions, and when appropriate, convert them into 
manual ISS annotations.

I would be very grateful if you could let me know what criteria your 
group uses to evaluate InterPro2GO annotations. What data sources do you

look at to confirm whether these electronic predictions are correct and 
what information does your final annotation include? (i.e. I assume that

the InterPro ID would go into the 'with' column, but what would be cited

in the reference column - do you have a GO reference?), also how long 
does this process take? Am I right in thinking that S. Pombe and 
DictyBase groups carry out these kinds of annotations?

I have just been asked this by a group who are considering whether they 
could carry out this kind of assessment while annotating their new
genome.

Thanks,
Emily

-- 
 ************************************
    Emily Dimmer
    GOA Coordinator
    EMBL-EBI
    Wellcome Trust Genome Campus
    Hinxton
    Cambridge CB10 1SD, U.K.
    Tel:     +44 1223 494654
    Fax:    +44 1223 494468
    email:  edimmer at ebi.ac.uk
 ************************************