[go] Do you upgrade InterPro2GO IEA annotations to ISS?

[Petra Fey]

Hi Emily,

We at dictyBase do essentially what Val does. We verify the  
annotations by running InterPro and Pfam analyses, and upgrade to ISS  
with our own reference if we can confirm the annotation. We also use  
the SF annotation tracker Val described if an annotation is wrong,  
too broad, not granular enough or absent.

Petra

On Oct 10, 2007, at 10:55 AM, E Dimmer wrote:

> Hi,
>
> A question for those GO annotation groups that manually assess  
> InterPro2GO 'IEA' predictions, and when appropriate, convert them  
> into manual ISS annotations.
>
> I would be very grateful if you could let me know what criteria  
> your group uses to evaluate InterPro2GO annotations. What data  
> sources do you look at to confirm whether these electronic  
> predictions are correct and what information does your final  
> annotation include? (i.e. I assume that the InterPro ID would go  
> into the 'with' column, but what would be cited in the reference  
> column - do you have a GO reference?), also how long does this  
> process take? Am I right in thinking that S. Pombe and DictyBase  
> groups carry out these kinds of annotations?
>
> I have just been asked this by a group who are considering whether  
> they could carry out this kind of assessment while annotating their  
> new genome.
>
> Thanks,
> Emily
>
> -- 
> ************************************
>    Emily Dimmer
>    GOA Coordinator
>    EMBL-EBI
>    Wellcome Trust Genome Campus
>    Hinxton
>    Cambridge CB10 1SD, U.K.
>    Tel:     +44 1223 494654
>    Fax:    +44 1223 494468
>    email:  edimmer at ebi.ac.uk
> ************************************
>