[go] Putting method/program names into the with field for ISS

[Benjamin Hitz]

On Sep 11, 2007, at 7:55 AM, Gwinn-Giglio, Michelle wrote:

>
>
> Hi,
>
> I disagree.  I think taking this approach would significantly muddy  
> the waters in terms of distinguishing between ISS and RCA.
>
> Anything that is based only on sequence analysis, be it simple  
> Blast or vastly more complicated modeling methods, should be ISS  
> because at their heart they are all comparing sequences of known  
> function to ones with unknown function.  Whether they do simple  
> alignments to make that comparison or more complicated models, it  
> is still a sequence based analysis.

I did not suggest otherwise.

Ben

--
Ben Hitz
Senior Scientific Programmer ** Saccharomyces Genome Database ** GO  
Consortium
Stanford University ** hitz at genome.stanford.edu



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