[go] Requirement for all 'unknown' annotations to use ND code

Valerie Wood val at sanger.ac.uk
Mon Sep 17 10:40:37 PDT 2007




But the problem is, that if there is no paper, it's the only way to get 
a gene product into the GO database...

We would still need a 'code' to add to things for which there was no data.
plus
We would still need a way to distinguish things which were unannotated 
but not looked at from unannotated and looked at.....

Do we need a different way to do this? ND seems to work well, although 
it is a deviation form normal evidence code usage.


Benjamin Hitz wrote:

>
> The reason this is confusing is that by annotation to the root node 
> (meaning "we looked and didn't find anything") we are overloading the 
> ontology to mark curation status as well as actual data.
>
> Ben
>
> --
> Ben Hitz 
> Senior Scientific Programmer ** Saccharomyces Genome Database ** GO 
> Consortium
> Stanford University ** hitz at genome.stanford.edu 
> <mailto:hitz at genome.stanford.edu>
>
>
>



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