[Go] Ontology development - March highlights

Michael Ashburner ma11 at gen.cam.ac.uk
Tue Apr 1 08:43:33 PDT 2008


Thankyou Midori.

Michael

On 1 Apr 2008, at 06:32, Midori Harris wrote:

> Dear GO,
>
> The most recent monthly report on ontology content, for March 2008,  
> is now
> available at:
>
>    http://gocwiki.geneontology.org/index.php/Mar2008_report
>
> Ontology development highlights from March:
>
>   * The 'regulates' relationships have gone live! They are now used  
> in the
> gene_ontology*.obo files and will be visible in AmiGO very soon (if  
> they
> aren't already). Many thanks to all who helped with this work,  
> especially
> David, Tanya and Chris.
>
>   * We're down to one live 'sensu' term, and it will be changed  
> before the
> GOC meeting (main wiki page:
> http://gocwiki.geneontology.org/index.php/Sensu_Main_Page; outstanding
> items: http://gocwiki.geneontology.org/index.php/Meeting_Notes_3).
>
>   * Reorganization of electron transport terms has been implemented
> (http://wiki.geneontology.org/index.php/Electron_transport).
>
>   * Two pilot projects are under way, one on electron transport and  
> the
> other on glycolysis and the TCA cycle, to document links between  
> function
> terms and process terms. Function-process main page:
> http://wiki.geneontology.org/index.php/Function-Process_Links.
>
>   * An overhaul of signal transduction process terms has begun
> (http://wiki.geneontology.org/index.php/Signaling).
>
> In April, the function-process pilot projects will continue, as  
> will the
> signaling overhaul and quality control work connected with the  
> regulation
> terms. We also hope to implement changes stemming from the lung
> development content meeting
> (http://wiki.geneontology.org/index.php/Lung_Development).
>
> There are several content-related items proposed for the GOC meeting
> agenda
> (http://wiki.geneontology.org/index.php/ 
> SLC_GO_Consortium_Meeting#Agenda_Items).
>
> As usual, details of small- and medium-scale changes are available  
> in the
> SourceForge Curator Requests tracker. Please contact us if you want  
> to help out
> with ontology work in a particular area, or if you have any  
> comments or
> questions about what's going on.
>
> Ontology Development wiki:
> http://wiki.geneontology.org/index.php/Ontology_Development
>
> SourceForge Curator Requests tracker:
> https://sourceforge.net/tracker/?group_id=36855&atid=440764
>
> Midori & David
> on behalf of GO's ontology developers
> _______________________________________________
> Go mailing list
> Go at geneontology.org
> http://fafner.stanford.edu/mailman/listinfo/go



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