[Go] Alert: proposal to obsolete GO:6512 that impacts existing annotations

[Pankaj Jaiswal]

Any suggestion for alternative term?

Pankaj

Rama Balakrishnan wrote:
> The proposal has been made to obsolete-
> 
> ubiquitin cycle, GO:6512
> 
> Annotations to this term exists (mostly IEAs) and are listed below.
> 
> =======================
> Group IEA non-IEA Total
> =======================
> GeneDB_Lmajor 34 0 34
> GeneDB_Pfalciparum 25 0 25
> GeneDB_Spombe 11 0 11
> GeneDB_Tbrucei 31 24 (all ISS) 55
> dictyBase 97 13 (all ISS) 110
> FB 25 33 (several codes) 58
> GOA_chicken 127 0 127
> GOA_cow 210 0 210
> GOA_human 503 8 (several codes) 511
> GOA_uniprot 7198 2 (1 ISS; 1 IDA) 7200
> Gramene_oryza 0 16 (all RCA) 16
> MGI 420 34 (several codes) 454
> RGD 171 9 (several codes) 180
> SGD 173 9 (several codes) 146
> TAIR 18 53 (52 RCA; 1 TAS) 71
> TIGR_Tbrucei_chr2 0 3 (all ISS) 3
> WB 28 0 28
> ZFIN 28 0 28
> 
> The reason for obsoleting this term is that this term is currently 
> defined as a cyclical process of ubiquitination and deubiquitination, 
> while it is not always so.
> 
> SourceForge link is 
> -https://sourceforge.net/tracker/index.php?func=detail&aid=1729553&group_id=36855&atid=440764 
> <https://sourceforge.net/tracker/index.php?func=detail&aid=1729553&group_id=36855&atid=440764>
> 
> The comment period ends on Tuesday, May 6, 2008.
> 
> 
> *** Unless objections are received by May 6, we will assume that you 
> agree to this change. ***
> 
> Thanks,
> 
> Rama
> 
> 
> 
> 
> 
> 
> +-----o--o ---------------------------------------------------------------
> 
>         o-o       Rama Balakrishnan Ph.D
> 
>         O          Senior Scientific Curator
> 
>       o-o         Saccharomyces Genome Database 
> 
>      o---o       Stanford University
> 
>    o----o        Stanford, CA 94305-5120
> 
>  O-----O       Ph: 650.725.8956 Fax: 650.723.7016
> 
>    0--o          email: rama at genome.stanford.edu 
> <mailto:rama at genome.stanford.edu>
> 
>      O            Website: http://www.yeastgenome.org 
> 
>     o-o           SGD Wiki- http://wiki.yeastgenome.org
> 
> +- o---o -----------------------------------------------------------------
> 
> 
> 
> 
> 
> 
> 
> 
> 
> ------------------------------------------------------------------------
> 
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-- 
Pankaj Jaiswal
G-15, Bradfield Hall
Dept. of Plant Breeding and Genetics
Cornell University
Ithaca, NY-14853, USA

Ph. +1-607-255-3103 / 4199
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