[Go] Alert: proposal to obsolete GO:6512 that impacts existing annotations

[Rama Balakrishnan]

GO:0016579 : protein deubiquitination
GO:0016567 : protein ubiquitination
are possible terms.

You may have to reannotate using some of the function terms too.

Rama


On Apr 21, 2008, at 12:35 PM, Pankaj Jaiswal wrote:

> Any suggestion for alternative term?
>
> Pankaj
>
> Rama Balakrishnan wrote:
>> The proposal has been made to obsolete-
>> ubiquitin cycle, GO:6512
>> Annotations to this term exists (mostly IEAs) and are listed below.
>> =======================
>> Group IEA non-IEA Total
>> =======================
>> GeneDB_Lmajor 34 0 34
>> GeneDB_Pfalciparum 25 0 25
>> GeneDB_Spombe 11 0 11
>> GeneDB_Tbrucei 31 24 (all ISS) 55
>> dictyBase 97 13 (all ISS) 110
>> FB 25 33 (several codes) 58
>> GOA_chicken 127 0 127
>> GOA_cow 210 0 210
>> GOA_human 503 8 (several codes) 511
>> GOA_uniprot 7198 2 (1 ISS; 1 IDA) 7200
>> Gramene_oryza 0 16 (all RCA) 16
>> MGI 420 34 (several codes) 454
>> RGD 171 9 (several codes) 180
>> SGD 173 9 (several codes) 146
>> TAIR 18 53 (52 RCA; 1 TAS) 71
>> TIGR_Tbrucei_chr2 0 3 (all ISS) 3
>> WB 28 0 28
>> ZFIN 28 0 28
>> The reason for obsoleting this term is that this term is currently  
>> defined as a cyclical process of ubiquitination and  
>> deubiquitination, while it is not always so.
>> SourceForge link is -https://sourceforge.net/tracker/index.php?func=detail&aid=1729553&group_id=36855&atid=440764 
>>  <https://sourceforge.net/tracker/index.php?func=detail&aid=1729553&group_id=36855&atid=440764 
>> >
>> The comment period ends on Tuesday, May 6, 2008.
>> *** Unless objections are received by May 6, we will assume that  
>> you agree to this change. ***
>> Thanks,
>> Rama
>> +-----o--o  
>> ---------------------------------------------------------------
>>        o-o       Rama Balakrishnan Ph.D
>>        O          Senior Scientific Curator
>>      o-o         Saccharomyces Genome Database      o---o        
>> Stanford University
>>   o----o        Stanford, CA 94305-5120
>> O-----O       Ph: 650.725.8956 Fax: 650.723.7016
>>   0--o          email: rama at genome.stanford.edu <mailto:rama at genome.stanford.edu 
>> >
>>     O            Website: http://www.yeastgenome.org     o- 
>> o           SGD Wiki- http://wiki.yeastgenome.org
>> +- o---o  
>> -----------------------------------------------------------------
>> ------------------------------------------------------------------------
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>
> -- 
> Pankaj Jaiswal
> G-15, Bradfield Hall
> Dept. of Plant Breeding and Genetics
> Cornell University
> Ithaca, NY-14853, USA
>
> Ph. +1-607-255-3103 / 4199
> fax: +1-607-255-6683