[Go] Alert: proposal to obsolete three biological process terms that impacts existing annotations

[Midori Harris]

A few eagle-eyed commentators have noticed that I forgot to fill in the 
suggested term to use instead. It is:

   protein serine/threonine kinase activity ; GO:0004674

m

On Fri, 8 Aug 2008, Midori Harris wrote:

> Dear GO,
>
> The proposal has been made to obsolete
>
>  casein kinase activity ; GO:0004680
>  casein kinase I activity ; GO:0004681
>  protein kinase CK2 activity ; GO:0004682
>
> Annotations to these terms exist as listed below:
>
>  gene_association.cgd.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004682	0	6	6
>
>  gene_association.dictyBase.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004681	0	2	2
>  GO:0004682	0	3	3
>
>  gene_association.fb.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004680	0	2	2
>  GO:0004681	0	15	15
>  GO:0004682	0	10	10
>
>  gene_association.GeneDB_Pfalciparum.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004681	0	1	1
>  GO:0004682	0	2	2
>
>  gene_association.GeneDB_Tbrucei.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004682	0	2	2
>
>  gene_association.goa_chicken.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004682	1	0	1
>
>  gene_association.goa_cow.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004682	1	1	2
>
>  gene_association.goa_human.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004681	0	4	4
>  GO:0004682	0	4	4
>
>  gene_association.gramene_oryza.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004682	0	2	2
>
>  gene_association.mgi.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004682	0	2	2
>
>  gene_association.rgd.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004680	0	5	5
>  GO:0004681	0	2	2
>  GO:0004682	0	3	3
>
>  gene_association.tair.gz
>  GO ID	IEA	non-IEA	total
>  GO:0004680	0	4	4
>  GO:0004681	0	14	14
>  GO:0004682	0	1	1
>
> The reason for obsoleting these terms is that they represent gene products.
>
> These terms are not in any GO slim or subset maintained in the GO .obo
> files, and are not used in any external mappings.
>
> SourceForge link:
> https://sourceforge.net/tracker/index.php?func=detail&aid=2042897&group_id=36855&atid=440764
>
> Comment period ends on August 22, 2008.
>
> *** Unless objections are received by August 22,
>     we will assume that you agree to this change. ***
>
> Thanks,
> Midori
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