[go] Alert: Proposal to obsolete GO:0006125 : thioredoxin pathway that impacts existing annotation

[Jennifer Deegan (nee Clark)]

Hi,

The proposal has been made to obsolete GO:0006125 : thioredoxin pathway.

There exist today annotations to this term as follows (data from AmiGO):

     * RGD: 3 objects
     * UniProtKB: 4 objects
     * GeneDB: 1 object
     * FlyBase: 1 object
     * MGI: 2 objects

The term is used in the following mapping:
MetaCyc: THIOREDOX-PWY

The term is not found in the generic GO slim set.

The reason for this proposal is that the term is undefined and we are 
unable to fix on a single intended meaning for it based on the current 
set of annotations.
We suggest that annotators might consider instead 'cell redox 
homeostasis'. If there are other requirements for different replacement 
terms then we can also make further additions.

UNLESS OBJECTIONS ARE RECEIVED BY 4th April WE WILL ASSUME THAT YOU 
AGREE TO THIS CHANGE.

Thanks,

Jennifer




-- 
Jennifer Deegan (nee Clark)
EMBL-European Bioinformatics Institute
Gene Ontology Consortium