[go] AmiGO and annotation qualifiers

[Amelia Ireland]

Hi all,

Thanks for the feedback so far on the qualifier / operator issue. It  
seems that it is important to differentiate between qualifiers  
(contributes_to, colocalizes_with) and operators (NOT), but there  
isn't a consensus on how to do that. I've created another possible  
version of the AmiGO page, to take into account the distinction  
between qualifiers and operators:

http://www.ebi.ac.uk/~aji/demo4.html

Note that the annotations with qualifiers are shown in the same table  
but the NOT annotations have been separated into a different table.

Does that work for people? It could be implemented so that users could  
choose between this display or the version in the current AmiGO  
release, where NOTs are displayed in the same table as the other  
annotations.

Thanks,
Amelia.

--
Amelia Ireland
GO Editorial Office,
European Bioinformatics Institute, UK.
Carbon neutral driving: http://www.targetneutral.com/TONIC/index.jsp