[go] map2slim problems

Erika Feltrin erika at cribi.unipd.it
Thu Feb 7 07:14:01 PST 2008


Dear all,

I am using map2slim perl script to group proteins annotate by GOA into
the GO categories listed in the Plant GO slim. I have tried map2slim
with small file as test, and it worked.
Unfortunately, when I run it using the proper files nothing happend.
I am usign a 2G RAM machine.

The input file that I am using for this script are:

PlantGOslim .obo file
http://www.geneontology.org/GO_slims/goslim_plant.obo

Gene Ontology .obo file 
http://www.geneontology.org/ontology/gene_ontology_edit.obo

GOA annotations file
ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz

Does anybody have any idea on what is the problem?

Thanks
Erika







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