[go] AmiGO beta announcement

[Alexander Diehl]

Rama,

I'm sorry if you find this misleading now.  In my earlier post I 
explained how I found the previous arrangement (in the beta) 
misleading.  Again, it comes down to trying to convey the maximal amount 
of information in the least amount of interface space.  While I 
appreciate your concern, I still feel Amelia's new arrangement is less 
misleading than the previous arrangement of columns, but this is 
probably quite subjective.

If anyone else is wondering what this about, compare these two displays:

1)  (current beta) 
http://goweb-dev.stanford.edu/cgi-bin/amigo/gp-assoc.cgi?gp=FB:FBgn0027356

2)  (Amelia's new column configuration) 
http://toy.lbl.gov:9012/cgi-bin/amigo/gp-assoc.cgi?gp=FB:FBgn0027356

or these two:

1)  (current beta) 
http://goweb-dev.stanford.edu/cgi-bin/amigo/gp-assoc.cgi?gp=MGI:MGI:2685628

2)  (Amelia's new column configuration) 
http://toy.lbl.gov:9012/cgi-bin/amigo/gp-assoc.cgi?gp=MGI:MGI:2685628


Thanks,

Alex



Rama Balakrishnan wrote:
> Sorry for not piping in earlier on this one. The way you have 
> reordered it 
> (http://toy.lbl.gov:9012/cgi-bin/amigo/gp-assoc.cgi?gp=FB:FBgn0027356) 
> with the NOT next to the evidence code, it looks like the qualifier 
> goes with the evidence code. I think this is misleading..
>
> rama
>
>
>
> On Jan 7, 2008, at 6:32 AM, Amelia Ireland wrote:
>
>> Hi Alex,
>>>
>> [displaying NOT annotations and column ordering]
>>>>> http://goweb-dev.stanford.edu/cgi-bin/amigo/gp-assoc.cgi?gp=MGI:MGI:2685628&session_id=1458amigo1197932357 
>>>>>
>>>>>
>>>>> the first line of the listed associations reads Qualifier: NOT, 
>>>>> Term: GO:0051092 : activation of NF-kappaB transcription factor, 
>>>>> link: 63 gene products,
>>
>> I've changed the column so that it is hopefully a little clearer now.
>>
>> Example:
>> http://toy.lbl.gov:9012/cgi-bin/amigo/gp-assoc.cgi?gp=FB:FBgn0027356
>>
>> Does that work?
>>
>> Cheers,
>> Amelia.
>>
>> -- 
>> Amelia Ireland
>> GO Editorial Office,
>> European Bioinformatics Institute, UK.
>> Carbon neutral driving: http://www.targetneutral.com/TONIC/index.jsp
>>
>>
>


-- 
Alexander Diehl, Ph.D.
Senior Scientific Curator
Mouse Genome Informatics
The Jackson Laboratory
600 Main Street
Bar Harbor, ME  04609

email:  adiehl at informatics.jax.org
work:  +1 (207) 288-6427
fax:  +1 (207) 288-6131