[Go] Alert: proposal to obsolete GO:0000051 (no annotations affected)

[Midori Harris]

Hello,

The proposal has been made to obsolete

   urea cycle intermediate metabolic process ; GO:0000051

This term is not used in any annotations; it is used in the following 
external2go mappings, and is in the prokaryote GO subset maintained within 
the OBO flat file.

mips2go:MIPS_funcat:01.01.05 metabolism of urea cycle, creatine and 
polyamines > GO:urea cycle intermediate metabolism ; GO:0000051

mips2go:MIPS_funcat:01.01.05.03 metabolism of urea (urea cycle) > GO:urea 
cycle intermediate metabolism ; GO:0000051

The reason for making these terms obsolete is that it is a grouping term 
that is not useful, but causes true path violations.

Suggested terms for annotations:
   urea cycle ; GO:0000050
   arginine metabolic process ; GO:0006525
   argininosuccinate metabolic process ; GO:0000053
   citrulline metabolic process ; GO:0000052
   ornithine metabolic process; GO:0006591

SourceForge link:
https://sourceforge.net/tracker/index.php?func=detail&aid=2023928&group_id=36855&atid=440764

*** Unless objections are received by August 1,
       we will assume that you agree to this change. ***

Midori






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