[Go] Usage of the With/From Column for IEA ?

[Pankaj Jaiswal]

I didn't hear from the group on this. Could you please help.

Pankaj

Pankaj Jaiswal wrote:
> http://www.geneontology.org/GO.evidence.shtml#iea
> 
> Ref: From the above site
> 
> Usage of the With/From Column for IEA
> 
> At the January 2007 GOC meeting, it was agreed that it will be required 
> to make an entry in the with/from column for all annotations made after 
> May 1, 2007 when using this evidence code to indicate what individual 
> sequences, sequence objects, methods, keyword mapping files, etc. are 
> the basis of the annotation. When multiple entries are placed in the 
> with/from field, they are separated by pipes.
> 
> ------------
> Based on this rule, would you please suggest, what would be the value 
> for the 'WITH' column.
> 
> - if we are making a TMHMM prediction for a 'putative tansmembrane' 
> annotation
> - if we have used TargetP/SignalP/Predotar/Psort to predict a putative 
> cellular localization
> 
> None of the above prediction softwares give appropriate value to be 
> filled in the 'WITH' column.
> 
> If you agree our suggestion is to relax this rule for IEA's.
> 
> Pankaj
>