[Go] Usage of the With/From Column for IEA ?

[Gwinn Giglio, Michelle]

Hi,

Well, considering our new policy for ISS not requiring "with" for the very
types of evidence you mention, it seems IEA should not require "with" as
well......

Michelle




On 6/11/08 1:12 PM, "Pankaj Jaiswal" <pj37 at cornell.edu> wrote:

> I didn't hear from the group on this. Could you please help.
> 
> Pankaj
> 
> Pankaj Jaiswal wrote:
>> http://www.geneontology.org/GO.evidence.shtml#iea
>> 
>> Ref: From the above site
>> 
>> Usage of the With/From Column for IEA
>> 
>> At the January 2007 GOC meeting, it was agreed that it will be required
>> to make an entry in the with/from column for all annotations made after
>> May 1, 2007 when using this evidence code to indicate what individual
>> sequences, sequence objects, methods, keyword mapping files, etc. are
>> the basis of the annotation. When multiple entries are placed in the
>> with/from field, they are separated by pipes.
>> 
>> ------------
>> Based on this rule, would you please suggest, what would be the value
>> for the 'WITH' column.
>> 
>> - if we are making a TMHMM prediction for a 'putative tansmembrane'
>> annotation
>> - if we have used TargetP/SignalP/Predotar/Psort to predict a putative
>> cellular localization
>> 
>> None of the above prediction softwares give appropriate value to be
>> filled in the 'WITH' column.
>> 
>> If you agree our suggestion is to relax this rule for IEA's.
>> 
>> Pankaj
>> 
> 
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