[Go] Usage of the With/From Column for IEA ?

[Pankaj Jaiswal]

Great. Do we need a formal word or voting on this request. We are 
waiting to submit some of our annotations that didn't make it through 
due to the mandatory 'with' rule.

Pankaj

Gwinn Giglio, Michelle wrote:
> 
> Hi,
> 
> Well, considering our new policy for ISS not requiring "with" for the very
> types of evidence you mention, it seems IEA should not require "with" as
> well......
> 
> Michelle
> 
> 
> 
> 
> On 6/11/08 1:12 PM, "Pankaj Jaiswal" <pj37 at cornell.edu> wrote:
> 
>> I didn't hear from the group on this. Could you please help.
>>
>> Pankaj
>>
>> Pankaj Jaiswal wrote:
>>> http://www.geneontology.org/GO.evidence.shtml#iea
>>>
>>> Ref: From the above site
>>>
>>> Usage of the With/From Column for IEA
>>>
>>> At the January 2007 GOC meeting, it was agreed that it will be required
>>> to make an entry in the with/from column for all annotations made after
>>> May 1, 2007 when using this evidence code to indicate what individual
>>> sequences, sequence objects, methods, keyword mapping files, etc. are
>>> the basis of the annotation. When multiple entries are placed in the
>>> with/from field, they are separated by pipes.
>>>
>>> ------------
>>> Based on this rule, would you please suggest, what would be the value
>>> for the 'WITH' column.
>>>
>>> - if we are making a TMHMM prediction for a 'putative tansmembrane'
>>> annotation
>>> - if we have used TargetP/SignalP/Predotar/Psort to predict a putative
>>> cellular localization
>>>
>>> None of the above prediction softwares give appropriate value to be
>>> filled in the 'WITH' column.
>>>
>>> If you agree our suggestion is to relax this rule for IEA's.
>>>
>>> Pankaj
>>>
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> 
> 

-- 
Pankaj Jaiswal
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Dept. of Plant Breeding and Genetics
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