[Go] Usage of the With/From Column for IEA ?

[Gwinn Giglio, Michelle]

I think we do need some kind of consensus - anyone else want to voice an
opinion?

Michelel



On 6/12/08 11:48 AM, "Pankaj Jaiswal" <pj37 at cornell.edu> wrote:

> Great. Do we need a formal word or voting on this request. We are
> waiting to submit some of our annotations that didn't make it through
> due to the mandatory 'with' rule.
> 
> Pankaj
> 
> Gwinn Giglio, Michelle wrote:
>> 
>> Hi,
>> 
>> Well, considering our new policy for ISS not requiring "with" for the very
>> types of evidence you mention, it seems IEA should not require "with" as
>> well......
>> 
>> Michelle
>> 
>> 
>> 
>> 
>> On 6/11/08 1:12 PM, "Pankaj Jaiswal" <pj37 at cornell.edu> wrote:
>> 
>>> I didn't hear from the group on this. Could you please help.
>>> 
>>> Pankaj
>>> 
>>> Pankaj Jaiswal wrote:
>>>> http://www.geneontology.org/GO.evidence.shtml#iea
>>>> 
>>>> Ref: From the above site
>>>> 
>>>> Usage of the With/From Column for IEA
>>>> 
>>>> At the January 2007 GOC meeting, it was agreed that it will be required
>>>> to make an entry in the with/from column for all annotations made after
>>>> May 1, 2007 when using this evidence code to indicate what individual
>>>> sequences, sequence objects, methods, keyword mapping files, etc. are
>>>> the basis of the annotation. When multiple entries are placed in the
>>>> with/from field, they are separated by pipes.
>>>> 
>>>> ------------
>>>> Based on this rule, would you please suggest, what would be the value
>>>> for the 'WITH' column.
>>>> 
>>>> - if we are making a TMHMM prediction for a 'putative tansmembrane'
>>>> annotation
>>>> - if we have used TargetP/SignalP/Predotar/Psort to predict a putative
>>>> cellular localization
>>>> 
>>>> None of the above prediction softwares give appropriate value to be
>>>> filled in the 'WITH' column.
>>>> 
>>>> If you agree our suggestion is to relax this rule for IEA's.
>>>> 
>>>> Pankaj
>>>> 
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>> 
>>