[Go] sporulation rearrangement

David Hill dph at informatics.jax.org
Fri Jun 13 05:47:04 PDT 2008


Jane,

Based on your comments, this makes sense to me.

David

Jane Lomax wrote:
> Hi - the PAMGO group are currently working on some terms to annotate 
> higher fungi and have encountered some problems with the existing 
> placement of the term 'sporulation' and its children in the graph. 
> Essentially the problem is that sporulation is a child of 'cell 
> differentiation' but in higher fungi spores are often multicellular or 
> syncytial structures so this is a tpv. So we'd like to propose some 
> changes to the existing graph to remedy this:
>
> NOW:
>
> developmental process
> ---[i] cellular developmental process
> ------[i] cell differentiation
> ---------[i] sporulation ; GO:0030435
> ------------[i] asexual sporulation ; GO:0030436
> ------------[i] sexual sporulation ; GO:0034293
>
> PROPOSED:
>
> developmental process
> ---[i] sporulation ; GO:new
> ------[i] cellular sporulation ; GO:0030435
> ------[i] multicellular or syncytial sporulation ; GO:new
> ---------[i] multicellular or syncytial sexual sporulation ; GO:new
> ---------[i] multicellular or syncytial asexual sporulation ; GO:new
> ------[i] sexual sporulation ; GO:new
> ---------[i] cellular sexual sporulation ; GO:0034293
> ---------[i] multicellular or syncytial sexual sporulation ; GO:new
> ------[i] asexual sporulation ; GO:new
> ---------[i] cellular asexual sporulation ; GO:0030436
> ---------[i] multicellular or syncytial asexual sporulation ; GO:new
>
> developmental process
> ---[i] cellular developmental process
> ------[i] cell differentiation
> ---------[i] cellular sporulation ; GO:0030435
> ------------[i] cellular asexual sporulation ; GO:0030436
> ------------[i] cellular sexual sporulation ; GO:0034293
>
> how does that sound to you single-celled fungi people?
>
> cheers,
>
> Jane
>


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