[Go] Protein Database for Atlantic salmon or rainbow trout?

[Emily Dimmer]

Hi Lakshmi,

Could you possibly let me know what kinds of GO annotations you find are 
being filtered out of UniProt for trout and salmon? I'm a bit concerned 
as I don't believe that the GO Consortium filters Atlantic salmon or 
rainbow trout proteins from the UniProt GOA gene association file when 
it is uploaded onto the GOC site. Therefore if you could let me know 
what is missing we can work to track this down.

Best wishes,
Emily

Lakshmi Pillai wrote:
> Hello Mike,
>
> AgBase (http://www.agbase.msstate.edu/) has GO annotations for trout and
> salmon. Most of these are filtered out of UniProt but we do have some
> additional ones in our community files.
>
> Please let me know if you need more information. 
>
> Regards,
>
> Lakshmi Pillai
> AgBase Biocurator
> Research Associate II
> Department of Basic Sciences, CVM
> P.O. Box 6100
> Mail Stop 9825
> Mississippi State University
> Mississippi State, MS 39762
> Tel: 662-325-1161
> Fax: 662-325-1031
> http://www.agbase.msstate.edu/
>
>
> vanauken at caltech.edu writes:
>   
>> Dear Mike,
>>
>> Thank you for writing to the GO Consortium.
>>
>> I'm forwarding your email on to the general GO mailing list to see if
>> there is anyone who knows of a protein database for Atlantic salmon or
>> rainbow trout.
>>
>> Best,
>> --Kimberly Van Auken
>> Database Curator, WormBase
>>
>> www.wormbase.org
>> www.geneontology.org
>>
>>     
>>> Date: Mon, 6 Apr 2009 10:04:40 -0700 (PDT)
>>> Message-Id: <200904061704.KAA13913 at bread.Stanford.EDU>
>>> To: gohelp at genome.stanford.edu
>>> Subject: GO Help query (from michael espinoza)
>>> From: mespinoz at u.washington.edu
>>>
>>> contactName: michael espinoza
>>> contactEmail: mespinoz at u.washington.edu
>>> contactText: Hello,
>>>
>>> We are trying to locate a protein database for Atlantic salmon or
>>>       
>> rainbow
>>     
>>> trout. If you could assist us in any way we would be most grateful.
>>>
>>> Thank you,
>>>
>>> Mike Espinoza
>>> Environmental and Occupational Health Sciences
>>> The University of Washington
>>>
>>>
>>>
>>>       
>>
>> _______________________________________________
>> Go mailing list
>> Go at geneontology.org
>> http://fafner.stanford.edu/mailman/listinfo/go
>>     
>
>
> _______________________________________________
> Go mailing list
> Go at geneontology.org
> http://fafner.stanford.edu/mailman/listinfo/go
>   


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------------------------------------------------------------------ 

    Emily Dimmer Ph.D.
    GOA Coordinator
    EMBL-EBI
    Wellcome Trust Genome Campus
    Hinxton
    Cambridge CB10 1SD, U.K.
    Tel:     +44 1223 494654
    Fax:    +44 1223 494468
    email:  edimmer at ebi.ac.uk
    URL:    http://www.ebi.ac.uk/goa