[Go] Protein Database for Atlantic salmon or rainbow trout?

[Lakshmi Pillai]

Oops! I meant to write "provided by" and not "filtered".

My apologies!

Lakshmi

Emily Dimmer <edimmer at ebi.ac.uk> writes:
>Hi Lakshmi,
>
>Could you possibly let me know what kinds of GO annotations you find are 
>being filtered out of UniProt for trout and salmon? I'm a bit concerned 
>as I don't believe that the GO Consortium filters Atlantic salmon or 
>rainbow trout proteins from the UniProt GOA gene association file when 
>it is uploaded onto the GOC site. Therefore if you could let me know 
>what is missing we can work to track this down.
>
>Best wishes,
>Emily
>
>Lakshmi Pillai wrote:
>> Hello Mike,
>>
>> AgBase (http://www.agbase.msstate.edu/) has GO annotations for trout and
>> salmon. Most of these are filtered out of UniProt but we do have some
>> additional ones in our community files.
>>
>> Please let me know if you need more information. 
>>
>> Regards,
>>
>> Lakshmi Pillai
>> AgBase Biocurator
>> Research Associate II
>> Department of Basic Sciences, CVM
>> P.O. Box 6100
>> Mail Stop 9825
>> Mississippi State University
>> Mississippi State, MS 39762
>> Tel: 662-325-1161
>> Fax: 662-325-1031
>> http://www.agbase.msstate.edu/
>>
>>
>> vanauken at caltech.edu writes:
>>   
>>> Dear Mike,
>>>
>>> Thank you for writing to the GO Consortium.
>>>
>>> I'm forwarding your email on to the general GO mailing list to see if
>>> there is anyone who knows of a protein database for Atlantic salmon or
>>> rainbow trout.
>>>
>>> Best,
>>> --Kimberly Van Auken
>>> Database Curator, WormBase
>>>
>>> www.wormbase.org
>>> www.geneontology.org
>>>
>>>     
>>>> Date: Mon, 6 Apr 2009 10:04:40 -0700 (PDT)
>>>> Message-Id: <200904061704.KAA13913 at bread.Stanford.EDU>
>>>> To: gohelp at genome.stanford.edu
>>>> Subject: GO Help query (from michael espinoza)
>>>> From: mespinoz at u.washington.edu
>>>>
>>>> contactName: michael espinoza
>>>> contactEmail: mespinoz at u.washington.edu
>>>> contactText: Hello,
>>>>
>>>> We are trying to locate a protein database for Atlantic salmon or
>>>>       
>>> rainbow
>>>     
>>>> trout. If you could assist us in any way we would be most grateful.
>>>>
>>>> Thank you,
>>>>
>>>> Mike Espinoza
>>>> Environmental and Occupational Health Sciences
>>>> The University of Washington
>>>>
>>>>
>>>>
>>>>       
>>>
>>> _______________________________________________
>>> Go mailing list
>>> Go at geneontology.org
>>> http://fafner.stanford.edu/mailman/listinfo/go
>>>     
>>
>>
>> _______________________________________________
>> Go mailing list
>> Go at geneontology.org
>> http://fafner.stanford.edu/mailman/listinfo/go
>>   
>
>
>-- 
>
>
>Do you need any additional GO annotation resources?
>Which proteins would you like annotated with GO?
>
>Let us know in the GOA User Survey, available at:
>http://www.ebi.ac.uk/GOA/contactus.html
>
>------------------------------------------------------------------ 
>
>    Emily Dimmer Ph.D.
>    GOA Coordinator
>    EMBL-EBI
>    Wellcome Trust Genome Campus
>    Hinxton
>    Cambridge CB10 1SD, U.K.
>    Tel:     +44 1223 494654
>    Fax:    +44 1223 494468
>    email:  edimmer at ebi.ac.uk
>    URL:    http://www.ebi.ac.uk/goa
>    
>