[Go] go db issues
Benjamin Hitz
hitz at genome.stanford.edu
Mon Apr 13 14:00:35 PDT 2009
>
> Perhaps send the URL & others can try. Perhaps SGD has been
> blocked...?
An example:
http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=protein&usehistory=y&term=NP_353046,NP_353249,NP_353250,NP_353251,NP_353252,NP_353253,NP_353254,NP_353255,NP_353256,NP_353257,NP_353258,NP_353543,NP_353545,NP_353546,NP_353547,NP_353548,NP_353549,NP_353552,NP_353556,NP_353570,NP_353571,NP_353572,NP_353573,NP_353574,NP_353575,NP_353577,NP_353578,NP_353579,NP_353580,NP_353581,NP_353582,NP_353584,NP_353585,NP_353587,NP_353589,NP_353590,NP_353591,NP_353593,NP_354299,NP_354562,NP_354563,NP_354613,NP_354692,NP_354693,NP_354694,NP_354903,NP_354937,NP_355632,NP_357091,NP_396287,NP_396486,NP_396488,NP_396491,NP_396492,NP_396493,NP_396497,NP_396498,NP_396499,NP_396502,NP_396505,NP_396509,NP_396510,NP_396511,NP_396519,NP_396521,NP_396522,NP_396523,NP_396672,NP_396673,NP_536093,NP_536106&retmax=500
Gives 'bad gateway' error sometimes. Others gives an xml file
containing a WebEnv field which is supposed to be used in the
following webservice URL
>>> This
>>> http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?retmode=text&db=protein&retmax=500&WebEnv=0BUt3HnRet03iYBWkOas0DxsyJKMQliURHWxwJ8fWngZjPLNInSiXg8XrHz@03EE1B259DFC1621_0084SID&rettype=genbank&query_key=1&retstart=0
>>>
But returns 100s of Mb.
Ben
--
Ben Hitz
Senior Scientific Programmer ** Saccharomyces Genome Database ** GO
Consortium
Stanford University ** hitz at genome.stanford.edu
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