[Go] GO terms as Genbank qualifiers

[Valerie Wood]

Hello Magdalene,

I don't put GO xrefs in the EMBL/NCBI submissions for S. pombe (fission 
yeast) but they are added by EMBL and the NCBI, so maybe they now do 
this for all organisms automatically?

val

Magdalen Lindeberg wrote:

> As part of a major upgrade to the NCBI annotation records for 
> Pseudomonas syringae I have been planning on  inputting the GO 
> annotations that were generated for P. syringae virulence factors as 
> part of the PAMGO project.
>
> However, the
>
>DDBJ/EMBL/GenBank Feature Table Definitions (Version
>8  Oct 2008)
>
>http://www.ncbi.nlm.nih.gov/projects/collab/FT/index.html#7.4.1
>no longer includes the /GO_[ontology] qualifiers formerly listed
>there.  
>
>My question to anyone who has been involved in inputting GO annotations
>to NCBI records, is the 
>
> /db_xref="GO:######" qualifier now the only option for capturing GO 
> annotations?
>
>thanks,
>Magdalen
>
>  
>
> Magdalen Lindeberg PhD
> Senior Research Associate and PPI Project Coordinator
> Dept of Plant Pathology
> Plant Science Building
> Cornell University
> Ithaca, NY 14853
>
> phone: (607)254-7297
> email: ML16 at cornell.edu
> http://pseudomonas-syringae.org/
>
>------------------------------------------------------------------------
>
>_______________________________________________
>Go mailing list
>Go at geneontology.org
>http://fafner.stanford.edu/mailman/listinfo/go
>  
>



-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE.