[Go] odd characters in term names

[Rama Balakrishnan]

There are lot of terms with 5' and 3' (5'-3' helicase activity etc).

Rama

On Jan 7, 2009, at 1:54 PM, Judith Blake wrote:

> Ben, are you sure it's not a typo?
> That said, hypens show up sometimes, commas too.
>
> judy
>
> -----Original Message-----
> From: go-bounces at genome.stanford.edu [mailto:go-bounces at genome.stanford.edu 
> ] On Behalf Of D'Eustachio, Peter
> Sent: Wednesday, January 07, 2009 4:29 PM
> To: Benjamin Hitz; go list
> Subject: Re: [Go] odd characters in term names
>
> Maybe this question should be directed to the official nomenclature
> groups for our various favorite organisms. GO should probably tolerate
> any odd characters that they find acceptable and possibly a few more
> besides.
>
> Peter D
>
> -----Original Message-----
> From: go-bounces at genome.stanford.edu
> [mailto:go-bounces at genome.stanford.edu] On Behalf Of Benjamin Hitz
> Sent: Wednesday, January 07, 2009 4:15 PM
> To: go list
> Subject: [Go] odd characters in term names
>
>
> So, we recently had two terms added under "Protein Complexes"
> GO: 32221, Clr6 histone deacetylase complex II'
> and
> GO: 33698, Clr6 histone deacetylase complex I/I'
>
> I understand that the ' is part of the name, but it's sort of an
> unpleasant character to deal with.  These broke the SGD slim mapper.
> Is there a set of characters that are not allowed in term names?
> Should there be?  Or should I just man up and make sure to escape  
> them.
>
> Ben
>
> --
> Ben Hitz
> Senior Scientific Programmer ** Saccharomyces Genome Database ** GO
> Consortium
> Stanford University ** hitz at genome.stanford.edu
>
>
>
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