[Go] question about using NOT qualifier

Valerie Wood val at sanger.ac.uk
Sat Jul 25 02:26:54 PDT 2009


Hi Debby,

This is caused by an incorrect mapping to Interpro domain  IPR001757.
this should be reported on the annotation tracker:
http://sourceforge.net/tracker/?atid=605890&group_id=36855&func=browse
and will be removed

Val




Debby Siegele wrote:

> I have a question about using the 'NOT' qualifier in cases where an 
> electronic annotation appears to be wrong.  The specific case is I 
> found E. coli proteins (e.g. YbhA and SerB) are annotated to 
> GO:0015662 'ATPase activity, coupled to transmembrane movement of 
> ions, phosphorylative mechanism.'  I think this electronic annotation 
> was made because these proteins and P-type ATPases share a common 
> catalytic domain, but YbhA and SerB aren't membrane proteins and don't 
> have any of the other conserved domains found in P-type ATPases.  How 
> do I indicate what the 'NOT' is based on?
>
> Thanks,
>
> Debby
>
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