[Go] Need Help with GO Cross References

[Midori Harris]

responded on gohelp

On Fri, 19 Jun 2009, vanauken at caltech.edu wrote:

> Dear Franck,
>
> Thanks for writing to the GO.
>
> I am forwarding your message on to the general GO mailing list to see if
> anyone can help sort out how to display the referenced entries from these
> two databases.
>
> Best,
> --Kimberly Van Auken
>
> Database Curator, WormBase
> www.wormbase.org
> www.geneontology.org
>
>
> contactName: Franck Valentin
> contactEmail: franckv at ebi.ac.uk
> contactText: Hi,
>
> I'm part of the team that maintain the EBI's search engine. GO is one of
> the resources we index and, as the other ones, we take into account the
> cross references defined in the data.
> For GO there are two cross references I can't figure out:
>
>    - egad
>           e.g. <go:accession>GO:0000067</go:accession>
>                    <go:database_symbol>EGAD</go:database_symbol>
>                    <go:reference>chromosome</go:reference>
>
>    - genprotec
>           e.g.    <go:accession>GO:0000036</go:accession>
>                     <go:database_symbol>GenProtEC</go:database_symbol>
>                     <go:reference>1.6.15.4</go:reference>)
>
> Could you tell me if there is a way to display the referenced entries
> (EGAD:chromosome and GenProtEC:1.6.15.4).
> I've found web sites that seem to correspond
> (http://www.tigr.org/tdb/egad/egad.shtml and http://genprotec.mbl.edu) but
> couldn't search the entries referenced by GO.
>
> Many thanks!
> Franck
>
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