[Go] recent change, "maternal behavior" relationship to "parental behavior"?

[Chris Mungall]

I have added a check for this to the production script[*] that checks  
the editors file prior to publishing it to the public URL. Subsequent  
mistakes like this will generate errors for go-admin and block  
publishing.

This is a 'last line of defense' sort of thing though. Perhaps we need  
to improve the checks at the OE level.

Cheers
Chris

[*] http://wiki.geneontology.org/index.php/Ontology_publishing_pipeline_2009

On Jun 23, 2009, at 8:45 AM, Midori Harris wrote:

> Yup. Will fix that too. Thanks!
>
> midori
>
> On Tue, 23 Jun 2009, John Matese wrote:
>
>>
>> Addendum:  this term is also in the wrong namespace?
>>
>> [Term]
>> id: GO:0060747
>> name: oral incubation
>> namespace: cellular_component
>> def: "A parental behavior in which fertilized eggs are taken into  
>> the mouth and held until hatching." [GOC:dph]
>> is_a: GO:0060746 ! parental behavior
>>
>>
>>
>> On Jun 23, 2009, at 11:33 AM, John Matese wrote:
>>
>>> Hi,
>>> One of our tools (Generic GO Term Mapper), is currently  
>>> nonfunctional, and our current best guess is that it may be  
>>> problem with the ontology?
>>> Error message contains :
>>> "There is an error in the obo file, where the relationship between  
>>> GO:0042711 and one or more of its parents is not correctly  
>>> defined. Please check the obo file. The program is unable to  
>>> continue."
>>> When I check the OBO file we have downloaded, I see that
>>> [Term]
>>> id: GO:0042711
>>> name: maternal behavior
>>> namespace: biological_process
>>> def: "Female behaviors associated with the care and rearing of  
>>> offspring." [GOC:curators]
>>> exact_synonym: "maternal behaviour" []
>>> is_a: GO:0060746 ! parental behavior
>>> [Term]
>>> id: GO:0060746
>>> name: parental behavior
>>> namespace: cellular_component
>>> def: "A reproductive behavior in which a parent cares for and  
>>> rears offspring." [GOC:dph]
>>> is_a: GO:0033057 ! reproductive behavior in a multicellular organism
>>> I don't see parental behavior in AmiGO and parental behavior  
>>> appears to be in the wrong aspect?
>>> Just letting you know,
>>> John
>>> John Matese
>>> Director, PUMAdb
>>> jcmatese at genomics.princeton.edu
>>> _______________________________________________
>>> Go mailing list
>>> Go at geneontology.org
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>>
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