From jdeegan at ebi.ac.uk Tue Sep 1 02:47:44 2009 From: jdeegan at ebi.ac.uk (Jennifer Deegan (nee Clark)) Date: Tue, 01 Sep 2009 10:47:44 +0100 Subject: [Go] Outreach and advocacy for August Message-ID: <4A9CEDC0.8040409@ebi.ac.uk> Hi, Jane and I are compiling the report on outreach and advocacy in GO for August. If you have been working to bring on new annotation groups, or to help users learn to use GO then it would be great if you could fill this in on the wiki: http://wiki.geneontology.org/index.php/Outreach_August_2009_Report Outreach highlight for July was the IGS Genomics Workshop. More details are at: http://wiki.geneontology.org/index.php/Outreach_July_2009_Report If you have produced talks, posters or publications on GO it would be great if you could also fill these in at: http://wiki.geneontology.org/index.php/Publications,_Talks,_Posters_2007-2009 Thanks, Jennifer From midori at ebi.ac.uk Tue Sep 1 05:34:35 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Tue, 1 Sep 2009 13:34:35 +0100 (BST) Subject: [Go] Ontology development - August highlights Message-ID: Dear GO, The most recent monthly report on ontology content, for August 2009, is now available at: http://wiki.geneontology.org/index.php/Aug2009_ontology_report Ontology development highlights from August: * Work on signal transduction terms is going very well (http://wiki.geneontology.org/index.php/Signaling, especially http://wiki.geneontology.org/index.php/Signaling_Meeting_Minutes_July_2009#3rd_August_2009). * The overhaul of virus-related terms is also going well (http://wiki.geneontology.org/index.php/Virus_terms). * Work on taxon triggers continues (http://wiki.geneontology.org/index.php/Taxon-GO_Implementation_April_2009_onwards#5th_August_2009 and http://wiki.geneontology.org/index.php/Taxon-GO_Implementation_August_28th_2009_onwards). * Work continues on kidney development terms, with help from experts in Edinburgh (including Duncan Davidson and others); see http://wiki.geneontology.org/index.php/Kidney_Development. * Addition of part_of links between the MF and BP ontologies continues. See http://wiki.geneontology.org/index.php/Function-Process_Links for background. * We're continuing with the plan to make the first internal cross-products (i.e., cross-products where both the genus and differentiae are GO terms) live. See http://wiki.geneontology.org/index.php/CJM_EBI_Visit_June_2009#Status_overview_and_release_plan; for background see see http://wiki.geneontology.org/index.php/Category:Cross_Products and http://wiki.geneontology.org/index.php/Editors_cross-product_implementation_plan, plus individual pages in the Cross_Products category. * Ontology quality control work continues as reported previously (http://wiki.geneontology.org/index.php/Ontology_Quality_Control). As usual, details of small- and medium-scale changes are available in the SourceForge Curator Requests tracker. Please contact us if you want to help out with ontology work in a particular area, or if you have any comments or questions about what's going on. Ontology Development wiki: http://wiki.geneontology.org/index.php/Ontology_Development SourceForge Curator Requests tracker: https://sourceforge.net/tracker/?group_id=36855&atid=440764 Midori & David on behalf of GO's ontology developers From gail at genome.stanford.edu Tue Sep 1 07:40:42 2009 From: gail at genome.stanford.edu (Gail Binkley) Date: Tue, 1 Sep 2009 07:40:42 -0700 (PDT) Subject: [Go] Uploading files to the GO wiki Message-ID: When the GO wiki (http://wiki.geneontology.org) was recently moved to a new machine, the wiki software was also upgraded. This upgrade however now prevents the upload of some Microsoft file formats, specifically .doc files from Office 2008, and all .docx, .xlsx, and .pptx files. Until the wiki software releases a fix, there are several work arounds you can do: 1. Don't upload Word documents at all. Rather cut and paste text into the wiki directly. 2. If you have to upload a Word document, use Office 2004. 3. Convert tab-delimited files to .xls files and upload them. We are sorry for the inconvenience and appreciate your understanding. GO Admin Stanford University From midori at ebi.ac.uk Tue Sep 1 11:00:45 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Tue, 1 Sep 2009 18:00:45 UT Subject: [Go] SourceForge Update Message-ID: <200909011800.n81I0j0m000530@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From hjd at informatics.jax.org Tue Sep 1 16:38:14 2009 From: hjd at informatics.jax.org (Harold Drabkin) Date: Tue, 01 Sep 2009 19:38:14 -0400 Subject: [Go] Progress Reports for GOC meeting in September In-Reply-To: References: Message-ID: <4A9DB066.9030304@informatics.jax.org> I have prepared a page for the new progress reports, and seeded an empty MGI page to show where you should put your groups report http://gocwiki.geneontology.org/index.php/Meeting_Progress_Reports_September_2009 Harold Judith Blake wrote: > Hi All, > > Please have your subcontract MOD and/or GO management group Progress > Reports posted to the GO wiki before the GOC meeting in September. > > The posting site is here: > > http://wiki.geneontology.org/index.php/Consortium_Meetings#Progress_Report_Templates > > > There are templates for MODs and for Ontology Development. > > We still need to add a template for > > Outreach and User Advocacy (Jen and Jane) > Reference Genome Project (Pascal and .....) > Software and Utilities (Ben and Amelia???) > SO (Karen) > > Please everyone also update the Publications/Tutorials/Posters report > on the wiki for 2009. > > All this makes our yearly NHGRI Progress Report easier to compile. > > Many thanks, > Judy > ------------------------------------------------------------------------ > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go > From midori at ebi.ac.uk Wed Sep 2 11:00:48 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Wed, 2 Sep 2009 18:00:48 UT Subject: [Go] SourceForge Update Message-ID: <200909021800.n82I0mKP019965@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Thu Sep 3 11:00:47 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Thu, 3 Sep 2009 18:00:47 UT Subject: [Go] SourceForge Update Message-ID: <200909031800.n83I0lYO006759@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Fri Sep 4 02:31:29 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Fri, 4 Sep 2009 10:31:29 +0100 (BST) Subject: [Go] Deadline TODAY: Cambridge GO Consortium & SAB meetings (fwd) Message-ID: Register now if you need a room at the college! ---------- Forwarded message ---------- Date: Mon, 31 Aug 2009 19:01:47 +0100 (BST) From: Midori Harris To: GO Mailing List Subject: [Go] Deadline THIS WEEK: Cambridge GO Consortium & SAB meetings Dear GO, The deadline to register for the Jesus College GO Consortium and SAB meetings is THIS FRIDAY, September 4th, if you want accommodation in the college. If you plan to arrange your own lodging, you have until September 14th to register. The registration form is linked from the meeting logistics wiki page: http://wiki.geneontology.org/index.php/2009_Cambridge_Meeting_Logistics The agenda is taknig shape at: http://wiki.geneontology.org/index.php/Cambridge_GO_Consortium_Meeting Let me know if you have any questions. See you in September! Midori _______________________________________________ Go mailing list Go at geneontology.org http://fafner.stanford.edu/mailman/listinfo/go _______________________________________________ Go mailing list Go at geneontology.org http://fafner.stanford.edu/mailman/listinfo/go From midori at ebi.ac.uk Fri Sep 4 11:01:32 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Fri, 4 Sep 2009 18:01:32 UT Subject: [Go] SourceForge Update Message-ID: <200909041801.n84I1WfN025892@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From tberardi at acoma.stanford.edu Fri Sep 4 14:33:35 2009 From: tberardi at acoma.stanford.edu (Tanya Berardini) Date: Fri, 4 Sep 2009 14:33:35 -0700 Subject: [Go] Consortium list for GO NAR paper Message-ID: <8e22ab960909041433s7462bf24hc5441a5bbbd65cbb@mail.gmail.com> Dear GO, I'm coordinating the GO NAR paper for next year's database issue and would like to collect the names of all the people at the various institutions that are a part of the GO Consortium. I'm attaching the list as it stood for the 2006 paper. Please review it and let me know which names to add or delete. I will submit the paper on Sept. 15th so your response before then is much appreciated. Thank you for your help. Tanya --------------- Midori A. Harris, Jennifer I. Deegan (n?e Clark), Amelia Ireland, Jane Lomax (GO-EBI, Hinxton, UK); Michael Ashburner, Susan Tweedie (FlyBase, Department of Genetics, University of Cambridge, Cambridge, UK); Seth Carbon, Suzanna Lewis, Chris Mungall, John Day-Richter (BBOP, LBNL, Berkeley, CA, USA), Karen Eilbeck (Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA), Judith A. Blake, Carol Bult, Alexander D. Diehl, Mary Dolan, Harold Drabkin, Janan T. Eppig, David P. Hill, Li Ni, Martin Ringwald (MGI, The Jackson Laboratory, Bar Harbor, ME, USA); Rama Balakrishnan, Gail Binkley, J. Michael Cherry, Karen R. Christie, Maria C. Costanzo, Qing Dong, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Eurie L. Hong, Cynthia J. Krieger, Stuart R. Miyasato, Robert S. Nash, Julie Park, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu (SGD, Department of Genetics, Stanford University, Stanford, CA, USA); David Botstein, Kara Dolinski, Michael S. Livstone, Rose Oughtred (Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA); Tanya Berardini, Donghui Li, Seung Y. Rhee (TAIR, Carnegie Institution, Department of Plant Biology, Stanford, CA, USA); Rolf Apweiler, Daniel Barrell, Evelyn Camon, Emily Dimmer, Rachael Huntley, Nicola Mulder (GOA Database, UniProt, EBI, Hinxton, UK); Varsha K. Khodiyar, Ruth C. Lovering, Sue Povey (UCL, London, UK); Rex Chisholm, Petra Fey, Pascale Gaudet, Warren Kibbe (dictyBase, Northwestern University, Chicago, IL, USA); Ranjana Kishore, Erich M. Schwarz, Paul Sternberg, Kimberly Van Auken (WormBase, California Institute of Technology, Pasadena, CA, USA); Michelle Gwinn Giglio, Linda Hannick, Jennifer Wortman (The J. Craig Venter Institute, Rockville, MD, USA); Martin Aslett, Matthew Berriman, Valerie Wood (Wellcome Trust Sanger Institute, Hinxton, UK); Howard Jacob, Stan Laulederkind, Victoria Petri, Mary Shimoyama, Jennifer Smith, Simon Twigger (RGD, Medical College of Wisconsin, Milwaukee, WI, USA); Pankaj Jaiswal (Gramene, Department of Plant Breeding, Cornell University, Ithaca, NY, USA); Trent Seigfried (MaizeGDB, UDSA-ARS, Ames, IA, USA); Doug Howe, Monte Westerfield (ZFIN, University of Oregon, Eugene, OR, USA); Candace Collmer (PAMGO, Wells College, Aurora, NY, USA); Trudy Torto-Alalibo (PAMGO, Virginia Bioinformatics Institute, VA, USA); Erika Feltrin, Giorgio Valle (CRIBI, University of Padua, Italy); Susan Bromberg, Shane Burgess, Fiona McCarthy (AgBase, Mississippi State University; MS, USA). -- Tanya Berardini TAIR Curator www.arabidopsis.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From rama at genome.stanford.edu Fri Sep 4 21:23:20 2009 From: rama at genome.stanford.edu (rama at genome.stanford.edu) Date: Fri, 4 Sep 2009 21:23:20 -0700 (PDT) Subject: [Go] Uploading doc(Re: Progress Reports for GOC meeting in September In-Reply-To: References: Message-ID: Judy, We can't upload Word documents in the Wiki (Wiki has some issues since its move to a new machine). Do you want us to send the report to you? I could cut and paste the text in the wiki, but if you have to print the document for the grant, the format won't be intact. Thanks, Rama On Thu, 27 Aug 2009, Judith Blake wrote: > Hi All, > > Please have your subcontract MOD and/or GO management group Progress Reports posted to the GO wiki before the GOC meeting in September. > > The posting site is here: > > http://wiki.geneontology.org/index.php/Consortium_Meetings#Progress_Report_Templates > > > There are templates for MODs and for Ontology Development. > > We still need to add a template for > > Outreach and User Advocacy (Jen and Jane) > Reference Genome Project (Pascal and .....) > Software and Utilities (Ben and Amelia???) > SO (Karen) > > Please everyone also update the Publications/Tutorials/Posters report on the wiki for 2009. > > All this makes our yearly NHGRI Progress Report easier to compile. > > Many thanks, > Judy > From jimhu at tamu.edu Fri Sep 4 22:50:18 2009 From: jimhu at tamu.edu (Jim Hu) Date: Sat, 5 Sep 2009 00:50:18 -0500 Subject: [Go] Uploading doc(Re: Progress Reports for GOC meeting in September In-Reply-To: References: Message-ID: <8418E19C-7128-4029-A531-BEDB6E6B35E8@tamu.edu> Rama, Does it work if they're converted to the old word format? I thought the problem was just with docx. Jim On Sep 4, 2009, at 11:23 PM, rama at genome.stanford.edu wrote: > > Judy, > > We can't upload Word documents in the Wiki (Wiki has some issues > since its move to a new machine). Do you want us to send the > report to you? I could cut and paste the text in the wiki, but if > you have > to print the document for the grant, the format won't be intact. > > Thanks, > > Rama > > > On Thu, 27 Aug 2009, Judith Blake wrote: > >> Hi All, >> >> Please have your subcontract MOD and/or GO management group >> Progress Reports posted to the GO wiki before the GOC meeting in >> September. >> >> The posting site is here: >> >> http://wiki.geneontology.org/index.php/Consortium_Meetings#Progress_Report_Templates >> >> >> There are templates for MODs and for Ontology Development. >> >> We still need to add a template for >> >> Outreach and User Advocacy (Jen and Jane) >> Reference Genome Project (Pascal and .....) >> Software and Utilities (Ben and Amelia???) >> SO (Karen) >> >> Please everyone also update the Publications/Tutorials/Posters >> report on the wiki for 2009. >> >> All this makes our yearly NHGRI Progress Report easier to compile. >> >> Many thanks, >> Judy >> > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go ===================================== Jim Hu Associate Professor Dept. of Biochemistry and Biophysics 2128 TAMU Texas A&M Univ. College Station, TX 77843-2128 979-862-4054 -------------- next part -------------- An HTML attachment was scrubbed... URL: From gail at genome.stanford.edu Sat Sep 5 06:01:11 2009 From: gail at genome.stanford.edu (Gail Binkley) Date: Sat, 5 Sep 2009 06:01:11 -0700 (PDT) Subject: [Go] Uploading doc(Re: Progress Reports for GOC meeting in September In-Reply-To: <8418E19C-7128-4029-A531-BEDB6E6B35E8@tamu.edu> References: <8418E19C-7128-4029-A531-BEDB6E6B35E8@tamu.edu> Message-ID: The problem also exists with .doc files generated from recent version of Office. Versions of .doc files from Office 2004 should work. This is a problem between Mediawiki and Microsoft mime type compatibilities. - Gail Binkley On Sat, 5 Sep 2009, Jim Hu wrote: > Rama, > > Does it work if they're converted to the old word format? I thought the > problem was just with docx. > > Jim > > On Sep 4, 2009, at 11:23 PM, rama at genome.stanford.edu wrote: > >> >> Judy, >> >> We can't upload Word documents in the Wiki (Wiki has some issues since its >> move to a new machine). Do you want us to send the >> report to you? I could cut and paste the text in the wiki, but if you have >> to print the document for the grant, the format won't be intact. >> >> Thanks, >> >> Rama >> >> >> On Thu, 27 Aug 2009, Judith Blake wrote: >> >>> Hi All, >>> >>> Please have your subcontract MOD and/or GO management group Progress >>> Reports posted to the GO wiki before the GOC meeting in September. >>> >>> The posting site is here: >>> >>> http://wiki.geneontology.org/index.php/Consortium_Meetings#Progress_Report_Templates >>> >>> >>> There are templates for MODs and for Ontology Development. >>> >>> We still need to add a template for >>> >>> Outreach and User Advocacy (Jen and Jane) >>> Reference Genome Project (Pascal and .....) >>> Software and Utilities (Ben and Amelia???) >>> SO (Karen) >>> >>> Please everyone also update the Publications/Tutorials/Posters report on >>> the wiki for 2009. >>> >>> All this makes our yearly NHGRI Progress Report easier to compile. >>> >>> Many thanks, >>> Judy >>> >> _______________________________________________ >> Go mailing list >> Go at geneontology.org >> http://fafner.stanford.edu/mailman/listinfo/go > > ===================================== > Jim Hu > Associate Professor > Dept. of Biochemistry and Biophysics > 2128 TAMU > Texas A&M Univ. > College Station, TX 77843-2128 > 979-862-4054 > > From Judith.Blake at jax.org Sat Sep 5 15:29:57 2009 From: Judith.Blake at jax.org (Judith Blake) Date: Sat, 5 Sep 2009 18:29:57 -0400 Subject: [Go] FW: Uploading doc(Re: Progress Reports for GOC meeting in September In-Reply-To: <4AA2C3B4.2010805@informatics.jax.org> Message-ID: ------ Forwarded Message From: Harold Drabkin Reply-To: Harold Drabkin Date: Sat, 5 Sep 2009 16:01:56 -0400 To: Judith Blake Cc: Subject: Re: Uploading doc(Re: [Go] Progress Reports for GOC meeting in September You can easily convert a word doc to a wiki doc and then cut paste. For MS word for windows, look here for converter http://www.sciteam.ubc.ca/~sciteam/w/index.php/Template:Wikiconverter or maybe this one http://www.infpro.com/Word2MediaWiki.aspx These both rely on visual basic, so the newest word won't work (no longer uses VB). If you use open office, it's easy add this by the extension manager http://wiki.services.openoffice.org/wiki/Odt2Wiki (you can open a word doc in openoffice also) The output from these should be a text file you can cut/paste into the wiki directly. hd Judith Blake wrote: > > Hi Rama, > > I was not aware of the load problem. Is this being fixed or is is a > long term thing. > > For now, cut and paste. > > My use of the reports is to include aspects of them in the submitted > report, incorporating into tables, with links to the wiki for each > subcontract. > > Thanks for letting us know. This is a good time to find out > > Best, > Judy > > On 9/5/09 12:23 AM, "rama at genome.stanford.edu" > wrote: > > > > Judy, > > We can't upload Word documents in the Wiki (Wiki has some issues since > its move to a new machine). Do you want us to send the > report to you? I could cut and paste the text in the wiki, but if > you have > to print the document for the grant, the format won't be intact. > > Thanks, > > Rama > > > On Thu, 27 Aug 2009, Judith Blake wrote: > > > Hi All, > > > > Please have your subcontract MOD and/or GO management group > Progress Reports posted to the GO wiki before the GOC meeting in > September. > > > > The posting site is here: > > > > http://wiki.geneontology.org/index.php/Consortium_Meetings#Progress_Report_Templates > > > > > > There are templates for MODs and for Ontology Development. > > > > We still need to add a template for > > > > Outreach and User Advocacy (Jen and Jane) > > Reference Genome Project (Pascal and .....) > > Software and Utilities (Ben and Amelia???) > > SO (Karen) > > > > Please everyone also update the Publications/Tutorials/Posters > report on the wiki for 2009. > > > > All this makes our yearly NHGRI Progress Report easier to compile. > > > > Many thanks, > > Judy > > > ------ End of Forwarded Message -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Mon Sep 7 11:00:55 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Mon, 7 Sep 2009 18:00:55 UT Subject: [Go] SourceForge Update Message-ID: <200909071800.n87I0t2n001075@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Tue Sep 8 11:00:45 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Tue, 8 Sep 2009 18:00:45 UT Subject: [Go] SourceForge Update Message-ID: <200909081800.n88I0jcf020237@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From tberardi at acoma.stanford.edu Tue Sep 8 15:53:40 2009 From: tberardi at acoma.stanford.edu (Tanya Berardini) Date: Tue, 8 Sep 2009 15:53:40 -0700 Subject: [Go] Please help update the funding list for the GO NAR paper Message-ID: <8e22ab960909081553j3b06fc5dx87c84a17a9c422e@mail.gmail.com> Hi again GO folks, I am also updating the Funding section of the paper to be in line with the current NAR requirements: -------------- Funding Details of all funding sources for the work in question should be given in a separate section entitled 'Funding'. This should appear before the 'Acknowledgements' section. The following rules should be followed: - The sentence should begin: ?This work was supported by ?? - The full official funding agency name should be given, i.e. ?National Institutes of Health?, not ?NIH? (full RIN-approved list of UK funding agencies) Grant numbers should be given in brackets as follows: ?[grant number xxxx]? - Multiple grant numbers should be separated by a comma as follows: ?[grant numbers xxxx, yyyy]? - Agencies should be separated by a semi-colon (plus ?and? before the last funding agency) - Where individuals need to be specified for certain sources of funding the following text should be added after the relevant agency or grant number 'to [author initials]'. An example is given here: ?This work was supported by the National Institutes of Health [AA123456 to C.S., BB765432 to M.H.]; and the Alcohol & Education Research Council [hfygr667789]. ------------ Please review the section below and provide the grant numbers necessary and to whom the grants were made. Please also let me know if I should add or delete any of the granting agencies. ----------------------------- Funding This work was supported by the National Human Genome Research Institute (NHGRI) [HG02273 to MA, JMC, JAB, and SEL]. GO Consortium member databases receive funding from several National Institutes of Health Institutes (NHGRI[grant number here]; National Institute of Child Health and Human Development [grant number here]; National Heart, Lung, and Blood Institute [grant number here]; National Institute of General Medical Sciences [grant number here]), by the National Science Foundation [grant number here]; the United States Department of Agriculture Cooperative State Research and Education Service [grant number here]; and the UK Medical Research Council [grant number here]. Thanks again for your help, Tanya -- Tanya Berardini TAIR Curator www.arabidopsis.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Wed Sep 9 11:00:47 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Wed, 9 Sep 2009 18:00:47 UT Subject: [Go] SourceForge Update Message-ID: <200909091800.n89I0lj8006773@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From Judith.Blake at jax.org Thu Sep 10 10:13:45 2009 From: Judith.Blake at jax.org (Judith Blake) Date: Thu, 10 Sep 2009 13:13:45 -0400 Subject: [Go] GOC Fri am schedule Message-ID: Hi All, Friday schedule will be that the GO-PI, available SAB and subcontract Pis, will meet to review and plan in regards to goals for our last year before writing the renewal. As developed on Wed and Thur, there will be also, on Friday morning, the opportunity for working groups to meet on topics needing further consideration. We will all regroup for lunch and then have a summary session after lunch. If there is a need for a 'all hands' topic to be reviewed after lunch, we can. Otherwise, we will confirm time/place for the next GOC meets (presumable sometime next March) and say our good-byes. Judy -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Thu Sep 10 11:00:44 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Thu, 10 Sep 2009 18:00:44 UT Subject: [Go] SourceForge Update Message-ID: <200909101800.n8AI0iCP026060@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Fri Sep 11 06:02:39 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Fri, 11 Sep 2009 14:02:39 +0100 (BST) Subject: [Go] Friday dinner change (Re: GOC Fri am schedule) In-Reply-To: References: Message-ID: Hi all, As a corollary, there will not be a group dinner on Friday. Holly or I will get in touch individually with the people who signed up for Friday dinner about options. Midori On Thu, 10 Sep 2009, Judith Blake wrote: > Hi All, > > Friday schedule will be that the GO-PI, available SAB and subcontract > Pis, will meet to review and plan in regards to goals for our last year > before writing the renewal. > > As developed on Wed and Thur, there will be also, on Friday morning, the > opportunity for working groups to meet on topics needing further > consideration. > > We will all regroup for lunch and then have a summary session after > lunch. If there is a need for a 'all hands' topic to be reviewed after > lunch, we can. Otherwise, we will confirm time/place for the next GOC > meets (presumable sometime next March) and say our good-byes. > > Judy > From midori at ebi.ac.uk Fri Sep 11 11:00:44 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Fri, 11 Sep 2009 18:00:44 UT Subject: [Go] SourceForge Update Message-ID: <200909111800.n8BI0iQ2012521@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Sat Sep 12 11:00:47 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Sat, 12 Sep 2009 18:00:47 UT Subject: [Go] SourceForge Update Message-ID: <200909121800.n8CI0lmD031668@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Mon Sep 14 11:00:12 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Mon, 14 Sep 2009 18:00:12 UT Subject: [Go] SourceForge Update Message-ID: <200909141800.n8EI0CPW024657@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From cherry at stanford.edu Mon Sep 14 22:42:07 2009 From: cherry at stanford.edu (Mike Cherry) Date: Mon, 14 Sep 2009 22:42:07 -0700 Subject: [Go] GOC Fri am schedule Message-ID: <269E0568-427D-440B-A16F-FBE0DFB1E885@stanford.edu> Everyone that can be present on Friday should be present. Friday morning is an important time for small group discussions. We want to take advance of your presence at Jesus College. There will be several topics that arise at the meeting that would benefit from more discussion. This is also a wonderful time to finish action items, ... -Mike > Hi All, > > Friday schedule will be that the GO-PI, available SAB and > subcontract Pis, will meet to review and plan in regards to goals > for our last year before writing the renewal. > > As developed on Wed and Thur, there will be also, on Friday morning, > the opportunity for working groups to meet on topics needing further > consideration. > > We will all regroup for lunch and then have a summary session after > lunch. If there is a need for a 'all hands' topic to be reviewed > after lunch, we can. Otherwise, we will confirm time/place for the > next GOC meets (presumable sometime next March) and say our good-byes. > > Judy > > From edimmer at ebi.ac.uk Tue Sep 15 02:07:18 2009 From: edimmer at ebi.ac.uk (Emily Dimmer) Date: Tue, 15 Sep 2009 10:07:18 +0100 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files Message-ID: <4AAF5946.9060501@ebi.ac.uk> Dear All, Tony in the GOA group has just carried out a check of the UniProtKB accessions applied in gp2protein mapping files submitted to the GO Consortium. Annotation groups should very shortly receive an email that indicates where in their file a secondary or deleted UniProtKB has been used. This email will also (where possible) indicate suitable replacement UniProtKB accessions. These messages will be sent to the email addresses indicated in the header of each group's gene association file. The GOA group uses these gp2protein files to display GO annotations from the different MODs to UniProtKB accessions; such annotations are displayed in QuickGO, GOA gene association files and in the GO cross-references displayed in UniProtKB. As all annotations to deleted or secondary UniProtKB accessions will in future be removed from our releases we would be very grateful if you could review any errors sent. We are planning to email these checks to annotation groups on the first of each month. I hope you find this information useful; please let us know if you have any concerns. Best wishes, Emily -- ------------------------------------------------------------------ Emily Dimmer Ph.D. GOA Coordinator EMBL-EBI Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD, U.K. Tel: +44 1223 494654 Fax: +44 1223 494468 email: edimmer at ebi.ac.uk URL: http://www.ebi.ac.uk/goa From Judith.Blake at jax.org Tue Sep 15 06:36:03 2009 From: Judith.Blake at jax.org (Judith Blake) Date: Tue, 15 Sep 2009 09:36:03 -0400 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: <20090915091000.0472D135AF29_AAF59E8B@ms01.jax.org> Message-ID: Emily, This will be very useful. Thanks for doing this. Judy On 9/15/09 5:07 AM, "Emily Dimmer" wrote: Dear All, Tony in the GOA group has just carried out a check of the UniProtKB accessions applied in gp2protein mapping files submitted to the GO Consortium. Annotation groups should very shortly receive an email that indicates where in their file a secondary or deleted UniProtKB has been used. This email will also (where possible) indicate suitable replacement UniProtKB accessions. These messages will be sent to the email addresses indicated in the header of each group's gene association file. The GOA group uses these gp2protein files to display GO annotations from the different MODs to UniProtKB accessions; such annotations are displayed in QuickGO, GOA gene association files and in the GO cross-references displayed in UniProtKB. As all annotations to deleted or secondary UniProtKB accessions will in future be removed from our releases we would be very grateful if you could review any errors sent. We are planning to email these checks to annotation groups on the first of each month. I hope you find this information useful; please let us know if you have any concerns. Best wishes, Emily -- ------------------------------------------------------------------ Emily Dimmer Ph.D. GOA Coordinator EMBL-EBI Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD, U.K. Tel: +44 1223 494654 Fax: +44 1223 494468 email: edimmer at ebi.ac.uk URL: http://www.ebi.ac.uk/goa _______________________________________________ Go mailing list Go at geneontology.org http://fafner.stanford.edu/mailman/listinfo/go -------------- next part -------------- An HTML attachment was scrubbed... URL: From jimhu at tamu.edu Tue Sep 15 08:25:08 2009 From: jimhu at tamu.edu (Jim Hu) Date: Tue, 15 Sep 2009 10:25:08 -0500 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: <4AAF5946.9060501@ebi.ac.uk> References: <4AAF5946.9060501@ebi.ac.uk> Message-ID: Just got ours. Thanks! Jim On Sep 15, 2009, at 4:07 AM, Emily Dimmer wrote: > Dear All, > > Tony in the GOA group has just carried out a check of the UniProtKB > accessions applied in gp2protein mapping files submitted to the GO > Consortium. Annotation groups should very shortly receive an email > that indicates where in their file a secondary or deleted UniProtKB > has been used. This email will also (where possible) indicate > suitable replacement UniProtKB accessions. These messages will be > sent to the email addresses indicated in the header of each group's > gene association file. > > The GOA group uses these gp2protein files to display GO annotations > from the different MODs to UniProtKB accessions; such annotations > are displayed in QuickGO, GOA gene association files and in the GO > cross-references displayed in UniProtKB. As all annotations to > deleted or secondary UniProtKB accessions will in future be removed > from our releases we would be very grateful if you could review any > errors sent. > > We are planning to email these checks to annotation groups on the > first of each month. I hope you find this information useful; please > let us know if you have any concerns. > > Best wishes, > Emily > > > > -- > > ------------------------------------------------------------------ > Emily Dimmer Ph.D. > GOA Coordinator > EMBL-EBI > Wellcome Trust Genome Campus > Hinxton > Cambridge CB10 1SD, U.K. > Tel: +44 1223 494654 > Fax: +44 1223 494468 > email: edimmer at ebi.ac.uk > URL: http://www.ebi.ac.uk/goa > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go ===================================== Jim Hu Associate Professor Dept. of Biochemistry and Biophysics 2128 TAMU Texas A&M Univ. College Station, TX 77843-2128 979-862-4054 -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Tue Sep 15 11:00:46 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Tue, 15 Sep 2009 18:00:46 UT Subject: [Go] SourceForge Update Message-ID: <200909151800.n8FI0kvW012244@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From suzi at fruitfly.org Tue Sep 15 16:45:37 2009 From: suzi at fruitfly.org (Suzanna Lewis) Date: Tue, 15 Sep 2009 16:45:37 -0700 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: <4AAF5946.9060501@ebi.ac.uk> References: <4AAF5946.9060501@ebi.ac.uk> Message-ID: <72BAFF8D-6A00-43E4-B7FF-86BAF44DA101@fruitfly.org> This is great. I assume that Dan B. is in sync with this as well. That is, for the new fasta files he is building for the ortholog collaboration will he be getting the MOD identifiers from these files? I believe this is what Rolf suggested we do, but just wanted to double check that we're all on the same page. We might consider adding a link to these from the GO pages once we're satisfied that they are ready. -S On Sep 15, 2009, at 2:07 AM, Emily Dimmer wrote: > Dear All, > > Tony in the GOA group has just carried out a check of the UniProtKB > accessions applied in gp2protein mapping files submitted to the GO > Consortium. Annotation groups should very shortly receive an email > that indicates where in their file a secondary or deleted UniProtKB > has been used. This email will also (where possible) indicate > suitable replacement UniProtKB accessions. These messages will be > sent to the email addresses indicated in the header of each group's > gene association file. > > The GOA group uses these gp2protein files to display GO annotations > from the different MODs to UniProtKB accessions; such annotations > are displayed in QuickGO, GOA gene association files and in the GO > cross-references displayed in UniProtKB. As all annotations to > deleted or secondary UniProtKB accessions will in future be removed > from our releases we would be very grateful if you could review any > errors sent. > > We are planning to email these checks to annotation groups on the > first of each month. I hope you find this information useful; please > let us know if you have any concerns. > > Best wishes, > Emily > > > > -- > > ------------------------------------------------------------------ > Emily Dimmer Ph.D. > GOA Coordinator > EMBL-EBI > Wellcome Trust Genome Campus > Hinxton > Cambridge CB10 1SD, U.K. > Tel: +44 1223 494654 > Fax: +44 1223 494468 > email: edimmer at ebi.ac.uk > URL: http://www.ebi.ac.uk/goa > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go > From dbarrell at ebi.ac.uk Wed Sep 16 01:16:17 2009 From: dbarrell at ebi.ac.uk (Daniel Barrell) Date: Wed, 16 Sep 2009 09:16:17 +0100 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: <72BAFF8D-6A00-43E4-B7FF-86BAF44DA101@fruitfly.org> References: <4AAF5946.9060501@ebi.ac.uk> <72BAFF8D-6A00-43E4-B7FF-86BAF44DA101@fruitfly.org> Message-ID: <4AB09ED1.2040504@ebi.ac.uk> Hi, Suzanna Lewis wrote: > I assume that Dan B. is in sync with this as well. That is, for the new > fasta files he is building for the ortholog collaboration will he be > getting the MOD identifiers from these files? I believe this is what > Rolf suggested we do, but just wanted to double check that we're all on > the same page. Yes I am. This was a task related to the clean up of gp2proteins that Tony took on. Thanks Tony! For those that are reporting discrepancies with the UniProt web page: this is because the data Tony is using is actually pre-release data, i.e. it is not public yet. We will change the timing of the script to only run at UniProt release time. Cheers Dan > We might consider adding a link to these from the GO pages once we're > satisfied that they are ready. > > -S > > On Sep 15, 2009, at 2:07 AM, Emily Dimmer wrote: > >> Dear All, >> >> Tony in the GOA group has just carried out a check of the UniProtKB >> accessions applied in gp2protein mapping files submitted to the GO >> Consortium. Annotation groups should very shortly receive an email >> that indicates where in their file a secondary or deleted UniProtKB >> has been used. This email will also (where possible) indicate suitable >> replacement UniProtKB accessions. These messages will be sent to the >> email addresses indicated in the header of each group's gene >> association file. >> >> The GOA group uses these gp2protein files to display GO annotations >> from the different MODs to UniProtKB accessions; such annotations are >> displayed in QuickGO, GOA gene association files and in the GO >> cross-references displayed in UniProtKB. As all annotations to deleted >> or secondary UniProtKB accessions will in future be removed from our >> releases we would be very grateful if you could review any errors sent. >> >> We are planning to email these checks to annotation groups on the >> first of each month. I hope you find this information useful; please >> let us know if you have any concerns. >> >> Best wishes, >> Emily >> >> >> >> -- >> >> ------------------------------------------------------------------ >> Emily Dimmer Ph.D. >> GOA Coordinator >> EMBL-EBI >> Wellcome Trust Genome Campus >> Hinxton >> Cambridge CB10 1SD, U.K. >> Tel: +44 1223 494654 >> Fax: +44 1223 494468 >> email: edimmer at ebi.ac.uk >> URL: http://www.ebi.ac.uk/goa >> >> _______________________________________________ >> Go mailing list >> Go at geneontology.org >> http://fafner.stanford.edu/mailman/listinfo/go >> -- Daniel Barrell EMBL - The EBI Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD Phone: +44 (0)1223 492551 Email: dbarrell at ebi.ac.uk From midori at ebi.ac.uk Wed Sep 16 06:23:42 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Wed, 16 Sep 2009 14:23:42 +0100 (BST) Subject: [Go] Watching remote people at GOC meetings Message-ID: Dear GO, We're going to have remote participation in the GO Consortium/SAB meeting next week, as we did at the last GOC and RefGen meetings in Eugene. Once again, we would like to have at least one person in the meeting room keeping an eye out for remote people who want to speak up. I've forwarded the "job description" from last time below, because it will work essentially the same way this time around. Please let us know if you're willing to help! Thanks, Midori ---------- Forwarded message ---------- Date: Fri, 27 Mar 2009 16:24:40 +0000 From: "Jennifer Deegan (nee Clark)" To: "go at geneontology.org" Subject: [Go] More volunteers needed Hi, We could just do with a few more volunteers for this role so nobody has to spend too long on the task. Any more takers? ============ At the GO Consortium meeting and Reference Genome meeting we are going to need volunteers to help each session chair by keeping an eye out for remote participants who raise their hands virtually. It is likely that any remote participants who wish to speak will indicate this by typing in the webex chat window, so it will be easy for the local person to see that this is happening. We just need one person for each session to take on the role and see that remote participants are not forgotten. If you would be prepared to take on this task for any period (however short) please could you get in touch with me? We hope to have lots of volunteers, so it will not be an arduous job. Names can be filled in on the agenda so we know who is doing the job at any given time. ============= Thanks in advance. Jennifer _______________________________________________ Go mailing list Go at geneontology.org http://fafner.stanford.edu/mailman/listinfo/go From midori at ebi.ac.uk Wed Sep 16 06:23:25 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Wed, 16 Sep 2009 14:23:25 +0100 (BST) Subject: [Go] A few more GOC/SAB meeting details Message-ID: Hi all, A few notes about next week's meetings: - The PIs have drafted the agenda: http://wiki.geneontology.org/index.php/Cambridge_GO_Consortium_Meeting - Holly has prepared a Google map showing the meeting and dinner venues: http://maps.google.com/maps/ms?ie=UTF&msa=0&msid=115043168235550753357.000473b124c276830ad23 - The arrival dinner on Tuesday, Sept. 24th, will start at 7:30 PM. - Those of you who are coming to dinner on Thursday, Sept. 24th, should have received an email from Holly with the menu selection. Please reply promptly, because the restaurant needs our pre-order by Tuesday 22nd. Also please let us know at once if you think you've signed up for Thursday dinner but didn't get the email. - Remote participation will work much the same way as for the Eugene meetings. A separate email is on the way seeking volunteers. If you want to attend remotely, please make sure you've filled in your details on the wiki (http://wiki.geneontology.org/index.php/2009_Cambridge_Meeting_Logistics#Remote_Attendees) so we know to send you the Webex invite. - Email if you have any questions! See you in Cambridge or online next week, Midori From Judith.Blake at jax.org Wed Sep 16 07:14:52 2009 From: Judith.Blake at jax.org (Judith Blake) Date: Wed, 16 Sep 2009 10:14:52 -0400 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: <4AB09ED1.2040504@ebi.ac.uk> Message-ID: Hi All, Just confirming that what we are checking on here are the existence of secondary UniProt IDs in gp2protein files.... That's great. We are working with Michele Magrane to resolve mouse ID discrepancies of other sorts. Judy On 9/16/09 4:16 AM, "Daniel Barrell" wrote: Hi, Suzanna Lewis wrote: > I assume that Dan B. is in sync with this as well. That is, for the new > fasta files he is building for the ortholog collaboration will he be > getting the MOD identifiers from these files? I believe this is what > Rolf suggested we do, but just wanted to double check that we're all on > the same page. Yes I am. This was a task related to the clean up of gp2proteins that Tony took on. Thanks Tony! For those that are reporting discrepancies with the UniProt web page: this is because the data Tony is using is actually pre-release data, i.e. it is not public yet. We will change the timing of the script to only run at UniProt release time. Cheers Dan > We might consider adding a link to these from the GO pages once we're > satisfied that they are ready. > > -S > > On Sep 15, 2009, at 2:07 AM, Emily Dimmer wrote: > >> Dear All, >> >> Tony in the GOA group has just carried out a check of the UniProtKB >> accessions applied in gp2protein mapping files submitted to the GO >> Consortium. Annotation groups should very shortly receive an email >> that indicates where in their file a secondary or deleted UniProtKB >> has been used. This email will also (where possible) indicate suitable >> replacement UniProtKB accessions. These messages will be sent to the >> email addresses indicated in the header of each group's gene >> association file. >> >> The GOA group uses these gp2protein files to display GO annotations >> from the different MODs to UniProtKB accessions; such annotations are >> displayed in QuickGO, GOA gene association files and in the GO >> cross-references displayed in UniProtKB. As all annotations to deleted >> or secondary UniProtKB accessions will in future be removed from our >> releases we would be very grateful if you could review any errors sent. >> >> We are planning to email these checks to annotation groups on the >> first of each month. I hope you find this information useful; please >> let us know if you have any concerns. >> >> Best wishes, >> Emily >> >> >> >> -- >> >> ------------------------------------------------------------------ >> Emily Dimmer Ph.D. >> GOA Coordinator >> EMBL-EBI >> Wellcome Trust Genome Campus >> Hinxton >> Cambridge CB10 1SD, U.K. >> Tel: +44 1223 494654 >> Fax: +44 1223 494468 >> email: edimmer at ebi.ac.uk >> URL: http://www.ebi.ac.uk/goa >> >> _______________________________________________ >> Go mailing list >> Go at geneontology.org >> http://fafner.stanford.edu/mailman/listinfo/go >> -- Daniel Barrell EMBL - The EBI Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD Phone: +44 (0)1223 492551 Email: dbarrell at ebi.ac.uk _______________________________________________ Go mailing list Go at geneontology.org http://fafner.stanford.edu/mailman/listinfo/go -------------- next part -------------- An HTML attachment was scrubbed... URL: From biosidd at gmail.com Wed Sep 16 08:37:32 2009 From: biosidd at gmail.com (Siddhartha Basu) Date: Wed, 16 Sep 2009 10:37:32 -0500 Subject: [Go] Re: Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: References: <4AAF5946.9060501@ebi.ac.uk> Message-ID: <4ab10640.0b38560a.729e.541c@mx.google.com> Just fixed few issues with our gp2protein.dictyBase file. Thanks to GOA and Tony for bringing this on. -siddhartha Siddhartha Basu Software developer, dictybase On Tue, 15 Sep 2009, Jim Hu wrote: > Just got ours. Thanks! > Jim > On Sep 15, 2009, at 4:07 AM, Emily Dimmer wrote: > > Dear All, > > Tony in the GOA group has just carried out a check of the UniProtKB > accessions applied in gp2protein mapping files submitted to the GO > Consortium. Annotation groups should very shortly receive an email that > indicates where in their file a secondary or deleted UniProtKB has been > used. This email will also (where possible) indicate suitable > replacement UniProtKB accessions. These messages will be sent to the > email addresses indicated in the header of each group's gene association > file. > > The GOA group uses these gp2protein files to display GO annotations from > the different MODs to UniProtKB accessions; such annotations are > displayed in QuickGO, GOA gene association files and in the GO > cross-references displayed in UniProtKB. As all annotations to deleted > or secondary UniProtKB accessions will in future be removed from our > releases we would be very grateful if you could review any errors sent. > > We are planning to email these checks to annotation groups on the first > of each month. I hope you find this information useful; please let us > know if you have any concerns. > > Best wishes, > Emily > > -- > > ------------------------------------------------------------------ > Emily Dimmer Ph.D. > GOA Coordinator > EMBL-EBI > Wellcome Trust Genome Campus > Hinxton > Cambridge CB10 1SD, U.K. > Tel: +44 1223 494654 > Fax: +44 1223 494468 > email: edimmer at ebi.ac.uk > URL: http://www.ebi.ac.uk/goa > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go > > ===================================== > > Jim Hu > > Associate Professor > > Dept. of Biochemistry and Biophysics > > 2128 TAMU > > Texas A&M Univ. > > College Station, TX 77843-2128 > > 979-862-4054 > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go From midori at ebi.ac.uk Wed Sep 16 11:03:51 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Wed, 16 Sep 2009 18:03:51 UT Subject: [Go] SourceForge Update Message-ID: <200909161803.n8GI3p3e031731@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Thu Sep 17 04:45:22 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Thu, 17 Sep 2009 12:45:22 +0100 (BST) Subject: [Go] Tuesday dinner (Re: A few more GOC/SAB meeting details) In-Reply-To: References: Message-ID: One more thing: for those of you coming to the Tuesday evening (22nd) dinner, please note that the venue has changed to Reastaurant 22 (http://www.restaurant22.co.uk/). The maps on the wiki will be updated shortly. Midori On Wed, 16 Sep 2009, Midori Harris wrote: > Hi all, > > A few notes about next week's meetings: > > - The PIs have drafted the agenda: > > http://wiki.geneontology.org/index.php/Cambridge_GO_Consortium_Meeting > > - Holly has prepared a Google map showing the meeting and dinner venues: > > http://maps.google.com/maps/ms?ie=UTF&msa=0&msid=115043168235550753357.000473b124c276830ad23 > > - The arrival dinner on Tuesday, Sept. 24th, will start at 7:30 PM. > > - Those of you who are coming to dinner on Thursday, Sept. 24th, should have > received an email from Holly with the menu selection. Please reply promptly, > because the restaurant needs our pre-order by Tuesday 22nd. Also please let > us know at once if you think you've signed up for Thursday dinner but didn't > get the email. > > - Remote participation will work much the same way as for the Eugene > meetings. A separate email is on the way seeking volunteers. If you want to > attend remotely, please make sure you've filled in your details on the wiki > (http://wiki.geneontology.org/index.php/2009_Cambridge_Meeting_Logistics#Remote_Attendees) > so we know to send you the Webex invite. > > - Email if you have any questions! > > See you in Cambridge or online next week, > Midori > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go > From sart2 at gen.cam.ac.uk Thu Sep 17 09:22:48 2009 From: sart2 at gen.cam.ac.uk (Susan Tweedie) Date: Thu, 17 Sep 2009 17:22:48 +0100 Subject: [Go] Verification of mappings to UniProtKB accessions in GO Consortium gp2protein files In-Reply-To: <4ab10640.0b38560a.729e.541c@mx.google.com> References: <4AAF5946.9060501@ebi.ac.uk> <4ab10640.0b38560a.729e.541c@mx.google.com> Message-ID: <6BFB5BE8-0783-438E-A5BA-BEFD6A1CA6F4@gen.cam.ac.uk> Yes - thanks Tony et al.. New improved FlyBase file now committed. Susan On 16 Sep 2009, at 16/Sep/2009 16:37:32, Siddhartha Basu wrote: > Just fixed few issues with our gp2protein.dictyBase file. Thanks to > GOA > and Tony for bringing this on. > > -siddhartha > > Siddhartha Basu > Software developer, dictybase > > On Tue, 15 Sep 2009, Jim Hu wrote: > >> Just got ours. Thanks! >> Jim >> On Sep 15, 2009, at 4:07 AM, Emily Dimmer wrote: >> >> Dear All, >> >> Tony in the GOA group has just carried out a check of the >> UniProtKB >> accessions applied in gp2protein mapping files submitted to the >> GO >> Consortium. Annotation groups should very shortly receive an >> email that >> indicates where in their file a secondary or deleted UniProtKB >> has been >> used. This email will also (where possible) indicate suitable >> replacement UniProtKB accessions. These messages will be sent >> to the >> email addresses indicated in the header of each group's gene >> association >> file. >> >> The GOA group uses these gp2protein files to display GO >> annotations from >> the different MODs to UniProtKB accessions; such annotations are >> displayed in QuickGO, GOA gene association files and in the GO >> cross-references displayed in UniProtKB. As all annotations to >> deleted >> or secondary UniProtKB accessions will in future be removed >> from our >> releases we would be very grateful if you could review any >> errors sent. >> >> We are planning to email these checks to annotation groups on >> the first >> of each month. I hope you find this information useful; please >> let us >> know if you have any concerns. >> >> Best wishes, >> Emily >> >> -- >> >> >> ------------------------------------------------------------------ >> Emily Dimmer Ph.D. >> GOA Coordinator >> EMBL-EBI >> Wellcome Trust Genome Campus >> Hinxton >> Cambridge CB10 1SD, U.K. >> Tel: +44 1223 494654 >> Fax: +44 1223 494468 >> email: edimmer at ebi.ac.uk >> URL: http://www.ebi.ac.uk/goa >> >> _______________________________________________ >> Go mailing list >> Go at geneontology.org >> http://fafner.stanford.edu/mailman/listinfo/go >> >> ===================================== >> >> Jim Hu >> >> Associate Professor >> >> Dept. of Biochemistry and Biophysics >> >> 2128 TAMU >> >> Texas A&M Univ. >> >> College Station, TX 77843-2128 >> >> 979-862-4054 > >> _______________________________________________ >> Go mailing list >> Go at geneontology.org >> http://fafner.stanford.edu/mailman/listinfo/go > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go Susan Tweedie FlyBase GO curator s.tweedie at gen.cam.ac.uk From midori at ebi.ac.uk Fri Sep 18 01:16:59 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Fri, 18 Sep 2009 09:16:59 +0100 (BST) Subject: [Go] Watching remote people at GOC meetings In-Reply-To: References: Message-ID: Thanks to those who have already signed up. Any more? On Wed, 16 Sep 2009, Midori Harris wrote: > Dear GO, > > We're going to have remote participation in the GO Consortium/SAB meeting > next week, as we did at the last GOC and RefGen meetings in Eugene. Once > again, we would like to have at least one person in the meeting room keeping > an eye out for remote people who want to speak up. > > I've forwarded the "job description" from last time below, because it will > work essentially the same way this time around. Please let us know if you're > willing to help! > > Thanks, > Midori > > ---------- Forwarded message ---------- > Date: Fri, 27 Mar 2009 16:24:40 +0000 > From: "Jennifer Deegan (nee Clark)" > To: "go at geneontology.org" > Subject: [Go] More volunteers needed > > Hi, > > We could just do with a few more volunteers for this role so nobody has to > spend too long on the task. Any more takers? > > ============ > At the GO Consortium meeting and Reference Genome meeting we are going to > need volunteers to help each session chair by keeping an eye out for remote > participants who raise their hands virtually. > > It is likely that any remote participants who wish to speak will indicate > this by typing in the webex chat window, so it will be easy for the local > person to see that this is happening. We just need one person for each > session to take on the role and see that remote participants are not > forgotten. > > If you would be prepared to take on this task for any period (however short) > please could you get in touch with me? We hope to have lots of volunteers, so > it will not be an arduous job. Names can be filled in on the agenda so we > know who is doing the job at any given time. > ============= > > > Thanks in advance. > > Jennifer > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go > From midori at ebi.ac.uk Fri Sep 18 11:00:46 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Fri, 18 Sep 2009 18:00:46 UT Subject: [Go] SourceForge Update Message-ID: <200909181800.n8II0lKL006396@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Sat Sep 19 11:00:47 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Sat, 19 Sep 2009 18:00:47 UT Subject: [Go] SourceForge Update Message-ID: <200909191800.n8JI0lYg024670@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Sun Sep 20 11:00:44 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Sun, 20 Sep 2009 18:00:44 UT Subject: [Go] SourceForge Update Message-ID: <200909201800.n8KI0iZE027466@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Mon Sep 21 11:01:17 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Mon, 21 Sep 2009 18:01:17 UT Subject: [Go] SourceForge Update Message-ID: <200909211801.n8LI1HAB014106@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Tue Sep 22 11:00:48 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Tue, 22 Sep 2009 18:00:48 UT Subject: [Go] SourceForge Update Message-ID: <200909221800.n8MI0m1c000693@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From messenger at webex.com Wed Sep 23 01:08:32 2009 From: messenger at webex.com (Mike Cherry) Date: Wed, 23 Sep 2009 08:08:32 GMT Subject: [Go] Please join now, meeting in progress: GOC-Cambridge Message-ID: <258237071.1253693312454.JavaMail.nobody@jsj2wl012.webex.com> Hello , Please join my meeting that is currently in progress. Topic: GOC-Cambridge Date: Wednesday, September 23, 2009 Time: 8:30 am, GMT Summer Time (London, GMT+01:00) Meeting Number: 922 658 894 Meeting Password: cambridge ------------------------------------------------------- To join the online meeting (Now from iPhones too!) ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/e.php?AT=WMI&EventID=122057267&PW=NZGE2ZDA2NTUx&RT=MiMyMQ%3D%3D 2. Enter your name and email address. 3. Enter the meeting password: cambridge 4. Click "Join Now". 5. Follow the instructions that appear on your screen. To view in other time zones or languages, please click the link: https://stanford.webex.com/stanford/e.php?AT=WMI&EventID=122057267&PW=NZGE2ZDA2NTUx&ORT=MiMyMQ%3D%3D ------------------------------------------------------- To join the audio conference only ------------------------------------------------------- To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code. Call-in toll number (US/Canada): 1-650-429-3300 Global call-in numbers: https://stanford.webex.com/stanford/globalcallin.php?serviceType=MC&ED=122057267&tollFree=0 Access code:922 658 894 ------------------------------------------------------- For assistance ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/mc 2. On the left navigation bar, click "Support". You can contact me at: cherry at stanford.edu 1-650-723-7541 Sign up for a free trial of WebEx http://www.webex.com/go/mcemfreetrial http://www.webex.com IMPORTANT NOTICE: This WebEx service includes a feature that allows audio and any documents and other materials exchanged or viewed during the session to be recorded. By joining this session, you automatically consent to such recordings. If you do not consent to the recording, do not join the session. -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Wed Sep 23 01:18:22 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Wed, 23 Sep 2009 09:18:22 +0100 (BST) Subject: [Go] Please join now, meeting in progress: GOC-Cambridge In-Reply-To: <258237071.1253693312454.JavaMail.nobody@jsj2wl012.webex.com> References: <258237071.1253693312454.JavaMail.nobody@jsj2wl012.webex.com> Message-ID: Hi all, Please also call in on the GO conference line: in US: 1 888 727 6732; passcode 601425# outside US: +1 719 867 3417; same passcode Midori On Wed, 23 Sep 2009, Mike Cherry wrote: > Hello , Please join my meeting that is currently in progress. Topic: GOC-Cambridge Date: Wednesday, September 23, 2009 Time: 8:30 am, GMT Summer Time (London, GMT+01:00) Meeting Number: 922 658 894 Meeting Password: cambridge ------------------------------------------------------- To join the online meeting (Now from iPhones too!) ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/e.php?AT=WMI&EventID=122057267&PW=NZGE2ZDA2NTUx&RT=MiMyMQ%3D%3D 2. Enter your name and email address. 3. Enter the meeting password: cambridge 4. Click "Join Now". 5. Follow the instructions that appear on your screen. To view in other time zones or languages, please click the link: https://stanford.webex.com/stanford/e.php?AT=WMI&EventID=122057267&PW=NZGE2ZDA2NTUx&ORT=MiMyMQ%3D%3D > ------------------------------------------------------- > To join the audio conference only > ------------------------------------------------------- > To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code. Call-in toll number (US/Canada): 1-650-429-3300 Global call-in numbers: https://stanford.webex.com/stanford/globalcallin.php?serviceType=MC&ED=122057267&tollFree=0 Access code:922 658 894 ------------------------------------------------------- For assistance ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/mc 2. On the left navigation bar, click "Support". You can contact me at: cherry at stanford.edu 1-650-723-7541 Sign up for a free trial of WebEx http://www.webex.com/go/mcemfreetrial http://www.webex.com IMPORTANT NOTICE: This WebEx service includes a feature that allows audio and any documents and other materials exchanged or viewed during the session to be recorded. By joining this session, you automatically consent to such recordings. If you do not consent to the recording, do not join the session. From val at sanger.ac.uk Wed Sep 23 03:21:56 2009 From: val at sanger.ac.uk (val at sanger.ac.uk) Date: Wed, 23 Sep 2009 11:21:56 +0100 (BST) Subject: [Go] community curation form Message-ID: here is the form I sent out for the pilot val -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -------------- next part -------------- A non-text attachment was scrubbed... Name: community_feedback_form.doc Type: application/msword Size: 84480 bytes Desc: not available URL: From val at sanger.ac.uk Wed Sep 23 03:59:48 2009 From: val at sanger.ac.uk (val at sanger.ac.uk) Date: Wed, 23 Sep 2009 11:59:48 +0100 (BST) Subject: [Go] this was the user feedback that prompted the pilot Message-ID: I just figured that eveyone should do this... v -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -------------- next part -------------- A non-text attachment was scrubbed... Name: wayne_wahls.doc Type: application/msword Size: 178176 bytes Desc: not available URL: From messenger at webex.com Thu Sep 24 01:10:11 2009 From: messenger at webex.com (Mike Cherry) Date: Thu, 24 Sep 2009 08:10:11 GMT Subject: [Go] Please join now, meeting in progress: GOC-Cambridge Message-ID: <208509905.1253779811408.JavaMail.nobody@jsj2wl011.webex.com> Hello , Please join my meeting that is currently in progress. Topic: GOC-Cambridge Date: Thursday, September 24, 2009 Time: 9:10 am, GMT Summer Time (London, GMT+01:00) Meeting Number: 923 878 997 Meeting Password: gocgoc ------------------------------------------------------- To join the online meeting (Now from iPhones too!) ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/e.php?AT=MI&EventID=122311727&UID=1132191652&PW=NYmFjYWFlMWZm&RT=MiMyMQ%3D%3D 2. Enter your name and email address. 3. Enter the meeting password: gocgoc 4. Click "Join Now". 5. Follow the instructions that appear on your screen. To view in other time zones or languages, please click the link: https://stanford.webex.com/stanford/e.php?AT=MI&EventID=122311727&UID=1132191652&PW=NYmFjYWFlMWZm&ORT=MiMyMQ%3D%3D ------------------------------------------------------- To join the audio conference only ------------------------------------------------------- To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code. Call-in toll number (US/Canada): 1-650-429-3300 Global call-in numbers: https://stanford.webex.com/stanford/globalcallin.php?serviceType=MC&ED=122311727&tollFree=0 Access code:923 878 997 ------------------------------------------------------- For assistance ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/mc 2. On the left navigation bar, click "Support". You can contact me at: cherry at stanford.edu 1-650-723-7541 Sign up for a free trial of WebEx http://www.webex.com/go/mcemfreetrial http://www.webex.com IMPORTANT NOTICE: This WebEx service includes a feature that allows audio and any documents and other materials exchanged or viewed during the session to be recorded. By joining this session, you automatically consent to such recordings. If you do not consent to the recording, do not join the session. -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Thu Sep 24 11:00:51 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Thu, 24 Sep 2009 18:00:51 UT Subject: [Go] SourceForge Update Message-ID: <200909241800.n8OI0pTW006179@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From messenger at webex.com Fri Sep 25 01:36:57 2009 From: messenger at webex.com (Mike Cherry) Date: Fri, 25 Sep 2009 08:36:57 GMT Subject: [Go] Please join now, meeting in progress: GO Clinic Message-ID: <261134994.1253867817587.JavaMail.nobody@jsj2wl013.webex.com> Hello , Please join my meeting that is currently in progress. Topic: GO Clinic Date: Friday, September 25, 2009 Time: 1:36 am, Pacific Daylight Time (San Francisco, GMT-07:00) Meeting Number: 929 407 918 Meeting Password: gocgoc ------------------------------------------------------- To join the online meeting (Now from iPhones too!) ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/e.php?AT=MI&EventID=122360177&UID=1132369057&PW=NOTRkMTcxNzQ2&RT=MiM0 2. Enter your name and email address. 3. Enter the meeting password: gocgoc 4. Click "Join Now". 5. Follow the instructions that appear on your screen. To view in other time zones or languages, please click the link: https://stanford.webex.com/stanford/e.php?AT=MI&EventID=122360177&UID=1132369057&PW=NOTRkMTcxNzQ2&ORT=MiM0 ------------------------------------------------------- To join the audio conference only ------------------------------------------------------- To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code. Call-in toll number (US/Canada): 1-650-429-3300 Global call-in numbers: https://stanford.webex.com/stanford/globalcallin.php?serviceType=MC&ED=122360177&tollFree=0 Access code:929 407 918 ------------------------------------------------------- For assistance ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/mc 2. On the left navigation bar, click "Support". You can contact me at: cherry at stanford.edu 1-650-723-7541 Sign up for a free trial of WebEx http://www.webex.com/go/mcemfreetrial http://www.webex.com IMPORTANT NOTICE: This WebEx service includes a feature that allows audio and any documents and other materials exchanged or viewed during the session to be recorded. By joining this session, you automatically consent to such recordings. If you do not consent to the recording, do not join the session. -------------- next part -------------- An HTML attachment was scrubbed... URL: From messenger at webex.com Fri Sep 25 01:21:01 2009 From: messenger at webex.com (Mike Cherry) Date: Fri, 25 Sep 2009 08:21:01 GMT Subject: [Go] Please join now, meeting in progress: GOC clinic Message-ID: <39975287.1253866860982.JavaMail.nobody@jsj2wl013.webex.com> Hello , Please join my meeting that is currently in progress. Topic: GOC clinic Date: Friday, September 25, 2009 Time: 1:20 am, Pacific Daylight Time (San Francisco, GMT-07:00) Meeting Number: 925 621 803 Meeting Password: goclinic ------------------------------------------------------- To join the online meeting (Now from iPhones too!) ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/e.php?AT=MI&EventID=122360347&UID=1132368837&PW=NMDY3NGU1NmY4&RT=MiM0 2. Enter your name and email address. 3. Enter the meeting password: goclinic 4. Click "Join Now". 5. Follow the instructions that appear on your screen. To view in other time zones or languages, please click the link: https://stanford.webex.com/stanford/e.php?AT=MI&EventID=122360347&UID=1132368837&PW=NMDY3NGU1NmY4&ORT=MiM0 ------------------------------------------------------- To join the audio conference only ------------------------------------------------------- To receive a call back, provide your phone number when you join the meeting, or call the number below and enter the access code. Call-in toll number (US/Canada): 1-650-429-3300 Global call-in numbers: https://stanford.webex.com/stanford/globalcallin.php?serviceType=MC&ED=122360347&tollFree=0 Access code:925 621 803 ------------------------------------------------------- For assistance ------------------------------------------------------- 1. Go to https://stanford.webex.com/stanford/mc 2. On the left navigation bar, click "Support". You can contact me at: cherry at stanford.edu 1-650-723-7541 Sign up for a free trial of WebEx http://www.webex.com/go/mcemfreetrial http://www.webex.com IMPORTANT NOTICE: This WebEx service includes a feature that allows audio and any documents and other materials exchanged or viewed during the session to be recorded. By joining this session, you automatically consent to such recordings. If you do not consent to the recording, do not join the session. -------------- next part -------------- An HTML attachment was scrubbed... URL: From midori at ebi.ac.uk Fri Sep 25 11:00:32 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Fri, 25 Sep 2009 18:00:32 UT Subject: [Go] SourceForge Update Message-ID: <200909251800.n8PI0WMF025366@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From midori at ebi.ac.uk Sat Sep 26 11:00:47 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Sat, 26 Sep 2009 18:00:47 UT Subject: [Go] SourceForge Update Message-ID: <200909261800.n8QI0lnt011038@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From pfey at northwestern.edu Mon Sep 28 06:54:43 2009 From: pfey at northwestern.edu (Petra Fey) Date: Mon, 28 Sep 2009 08:54:43 -0500 Subject: [Go] Brief meeting report for GO News site Message-ID: Hello, This is for all who attended last week's GO meeting. Jane reported that there was a request for a short article about the meeting on the GO News site http://go.berkeleybop.org/news4go/ that I'm coordinating at the moment. It should be just a short article, with a link to the meeting minutes. Any volunteer who was at the meeting? Thanks! Petra & the GO News Group From midori at ebi.ac.uk Mon Sep 28 11:00:47 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Mon, 28 Sep 2009 18:00:47 UT Subject: [Go] SourceForge Update Message-ID: <200909281800.n8SI0lck003236@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From rama at genome.stanford.edu Mon Sep 28 16:06:37 2009 From: rama at genome.stanford.edu (rama at genome.stanford.edu) Date: Mon, 28 Sep 2009 16:06:37 -0700 (PDT) Subject: [Go] Brief meeting report for GO News site In-Reply-To: References: Message-ID: Petra, I will give this a try. Rama On Mon, 28 Sep 2009, Petra Fey wrote: > Hello, > > This is for all who attended last week's GO meeting. Jane reported that there > was a request for a short article about the meeting on the GO News site > http://go.berkeleybop.org/news4go/ that I'm coordinating at the moment. > > It should be just a short article, with a link to the meeting minutes. Any > volunteer who was at the meeting? > > Thanks! > > Petra & the GO News Group > > _______________________________________________ > Go mailing list > Go at geneontology.org > http://fafner.stanford.edu/mailman/listinfo/go From midori at ebi.ac.uk Tue Sep 29 11:01:11 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Tue, 29 Sep 2009 18:01:11 UT Subject: [Go] SourceForge Update Message-ID: <200909291801.n8TI1BmZ022032@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: From cherry at stanford.edu Tue Sep 29 12:55:57 2009 From: cherry at stanford.edu (cherry at stanford.edu) Date: Tue, 29 Sep 2009 12:55:57 -0700 (PDT) Subject: [Go] Gene Ontology Email lists unavailable Oct 2nd Message-ID: <200909291955.n8TJtvwH025468@fafner.Stanford.EDU> The mailserver that provides the Gene Ontology mailing lists will be down this weekend. All lists and the web site for the mailing lists will be unavailable from noon (Pacific) October 2nd and back before noon (Pacific) October 4rd. You are subscribed to the one of the GOC lists. I apologize for the trouble if you receive this message more than once. All subscriptions to all lists are being sent this message. If you happen to send an email during the down time you do not need to send the message again. It is normal for mailservers to keep trying for five days. Your message will simply be delayed. The main GO web sites and tools are not affected and will be available. Cheers, Mike Cherry From midori at ebi.ac.uk Wed Sep 30 03:35:22 2009 From: midori at ebi.ac.uk (Midori Harris) Date: Wed, 30 Sep 2009 11:35:22 +0100 (BST) Subject: [Go] FW: Feedback (fwd) Message-ID: Hi all, If any of you who attended the GOC meeting last week would like to fill out a survey from Jesus College, follow the link below. cheers, m ---------- Forwarded message ---------- Date: Tue, 29 Sep 2009 08:42:35 +0100 From: Holly Foster To: 'Midori Harris' Subject: FW: Feedback Morning Midori I hope everything went well last week. Please find below a request from the college Kind regards Holly Foster Workshops and Exhibitions Organiser European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK Tel: +44 (0) 1223 492650 Fax: +44 (0) 1223 492621 Email: Holly at ebi.ac.uk From: Ann Turner [mailto:a.turner at jesus.cam.ac.uk] Sent: 28 September 2009 11:03 To: holly at ebi.ac.uk Subject: Feedback Dear Holly Further to your event here at Jesus College last week, we were hoping you might be able to spare a moment to complete the feedback form on our website (link below). http://www.jesus.cam.ac.uk/conference/contacts/questionnaire.htm We really do appreciate any comments you have on all aspects of your visit, as they assist us in constantly monitoring and improving our service levels. Kind regards, Ann and Hazel From midori at ebi.ac.uk Wed Sep 30 11:00:53 2009 From: midori at ebi.ac.uk (midori at ebi.ac.uk) Date: Wed, 30 Sep 2009 18:00:53 UT Subject: [Go] SourceForge Update Message-ID: <200909301800.n8UI0rlc008322@pigeon.ebi.ac.uk> An HTML attachment was scrubbed... URL: -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: not available URL: