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Hi Jim,<br>
<br>
At CGD, we make a file available to users that contains all GO
annotations, as well as linking to the GOC site so users can download
the filtered file. I agree with you that for genomes that are largely
uncharacterized, IEAs can be valuable even if they are older than a
year.<br>
<br>
Maria<br>
<pre class="moz-signature" cols="72">Maria C. Costanzo, Ph.D.
Senior Scientific Curator, Saccharomyces Genome Database
and Candida Genome Database
Department of Genetics
Stanford University School of Medicine
Stanford, CA 94305-5120
Phone: 650-725-8956
Fax: 650-725-1534
<a class="moz-txt-link-freetext" href="http://www.yeastgenome.org/">http://www.yeastgenome.org/</a>
<a class="moz-txt-link-freetext" href="http://www.candidagenome.org/">http://www.candidagenome.org/</a>
<a class="moz-txt-link-abbreviated" href="mailto:maria@genome.stanford.edu">maria@genome.stanford.edu</a>
</pre>
<br>
<br>
Jim Hu wrote:
<blockquote cite="mid:59A99D6E-85D9-4054-9E39-828C5EF660B8@tamu.edu"
type="cite">
<div>Hi All,</div>
<div><br>
</div>
As I recall, this was discussed at the SLC consortium meeting, but I
find that I can't reconstruct the rationale for the 1 year expiration
date on IEAs. For E. coli, we're importing the IEAs from Uniprot, but
most of them will expire almost immediately. I assume that there is a
problem in other genomes of too many IEAs. But perhaps a limit on how
many per gene or some such might be more flexible.
<div><br>
</div>
<div>For our E. coli websites, I think it makes sense to display IEAs
with appropriate caveats, since we're trying to encourage the community
to do quality control on them. But I'm not sure, and I imagine that
other mods have thought about this a lot.<br>
<div><br>
</div>
<div>Jim</div>
<div><br>
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