[Ontology-editors] organization, biogenesis etc

Chris Mungall cjm at berkeleybop.org
Fri Oct 3 11:46:54 PDT 2008


 From the latest meetings summarized here:
http://wiki.geneontology.org/index.php/Cellular_component_processes

X organization and biogenesis -> X organization
X biogenesis -> X organization

(with synonyms retained, exceptions allowed etc)

This is great - I was never quite sure how to write the XP definitions  
for these terms before, which resulted in the reasoner giving curious  
results. I had to filter them before submitting tracker items.

Now these terms will make use of a single relation in all their XP  
definitions, results_in_organization_of

I can go ahead and add these today then run the reasoner (I think  
there will be a lot of graph changes suggested..). Even though the  
renaming is not complete, I will go ahead on the assumption that the  
two changes above are being made.

Note that if I do this the reasoner will infer equivalence between  
"cell projection biogenesis" and ""cell projection organization and  
biogenesis". This seems fine, since from my reading of the above page  
these will be merged anyway.






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