[Ontology-editors] organization, biogenesis etc
Chris Mungall
cjm at berkeleybop.org
Fri Oct 3 11:46:54 PDT 2008
From the latest meetings summarized here:
http://wiki.geneontology.org/index.php/Cellular_component_processes
X organization and biogenesis -> X organization
X biogenesis -> X organization
(with synonyms retained, exceptions allowed etc)
This is great - I was never quite sure how to write the XP definitions
for these terms before, which resulted in the reasoner giving curious
results. I had to filter them before submitting tracker items.
Now these terms will make use of a single relation in all their XP
definitions, results_in_organization_of
I can go ahead and add these today then run the reasoner (I think
there will be a lot of graph changes suggested..). Even though the
renaming is not complete, I will go ahead on the assumption that the
two changes above are being made.
Note that if I do this the reasoner will infer equivalence between
"cell projection biogenesis" and ""cell projection organization and
biogenesis". This seems fine, since from my reading of the above page
these will be merged anyway.
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