[Ontology-editors] regulation term requests

[Tanya Berardini]

Hi Chris,

I've just added a couple terms to the new-term-queue.txt file and checked it
into cvs.  I wasn't quite sure about the appropriate use of the
new-terms.obo and new-terms-full.obo files.  It seems that if I'm going to
type out a new term suggestion in obo format, then I have all the info
necessary to do it in OE and OE is less likely to make mistakes in the
format than I am.

I'm excited to see what will turn up in
go_reglive_withNew-reasoned-filtered.obo in the morning.  Following on
Jane's question below, what would you suggest the best step to integrate the
new terms into the ontology would be?

Just take the new obo stanzas and then plop them into a fresh copy of the
gene_ontology_write.obo?

Obomerge?

Thanks,

Tanya

On Thu, Sep 11, 2008 at 4:55 AM, Jane Lomax <jane at ebi.ac.uk> wrote:

> How does this system work wrt merges with the live file, Chris? Do we need
> to use obomerge to merge go_reglive_withNew-reasoned-filtered.obo with the
> live file?
>
> cheers,
>
> Jane
>
>
> On Fri, 5 Sep 2008, Chris Mungall wrote:
>
>  If anyone wants to try out the regulation term request system, it's ready
>> for action. Get a fresh copy of go/scratch/regulates_xp_live, modify and
>> commit new-term-queue.txt and/or new-terms.obo, then check
>> go_reglive_withNew-reasoned-filtered.obo the next day!
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>
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> Dr Jane Lomax
> GO Editorial Office
> EMBL-EBI
> Wellcome Trust Genome Campus
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-- 
Tanya Berardini
TAIR Curator
www.arabidopsis.org
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