[Ontology-editors] regulation term requests

[Jane Lomax]

So what happened then, Tanya? Did it work?

Tanya Berardini wrote:
> Hi Chris,
>
> I've just added a couple terms to the new-term-queue.txt file and 
> checked it into cvs.  I wasn't quite sure about the appropriate use of 
> the new-terms.obo and new-terms-full.obo files.  It seems that if I'm 
> going to type out a new term suggestion in obo format, then I have all 
> the info necessary to do it in OE and OE is less likely to make 
> mistakes in the format than I am. 
>
> I'm excited to see what will turn up in 
> go_reglive_withNew-reasoned-filtered.obo in the morning.  Following on 
> Jane's question below, what would you suggest the best step to 
> integrate the new terms into the ontology would be? 
>
> Just take the new obo stanzas and then plop them into a fresh copy of 
> the gene_ontology_write.obo?
>
> Obomerge?
>
> Thanks,
>
> Tanya
>
> On Thu, Sep 11, 2008 at 4:55 AM, Jane Lomax <jane at ebi.ac.uk 
> <mailto:jane at ebi.ac.uk>> wrote:
>
>     How does this system work wrt merges with the live file, Chris? Do
>     we need to use obomerge to merge
>     go_reglive_withNew-reasoned-filtered.obo with the live file?
>
>     cheers,
>
>     Jane
>
>
>     On Fri, 5 Sep 2008, Chris Mungall wrote:
>
>         If anyone wants to try out the regulation term request system,
>         it's ready for action. Get a fresh copy of
>         go/scratch/regulates_xp_live, modify and commit
>         new-term-queue.txt and/or new-terms.obo, then check
>         go_reglive_withNew-reasoned-filtered.obo the next day!
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>
>     -- 
>     Dr Jane Lomax
>     GO Editorial Office
>     EMBL-EBI
>     Wellcome Trust Genome Campus
>     Hinxton
>     Cambridgeshire, UK
>     CB10 1SD
>
>     p: +44 1223 492516
>     f: +44 1223 494468
>
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>
>
>
> -- 
> Tanya Berardini
> TAIR Curator
> www.arabidopsis.org <http://www.arabidopsis.org>
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-- 
Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD

p: +44 1223 492516
f: +44 1223 494468