[Ontology-editors] regulation term requests

[Tanya Berardini]

Sorta, kinda.  :)

But Chris is on the ball and fixing stuff up as we move forward and see how
we can best use this approach.  We'll give everyone a report when we've got
the kinks worked out.

Tanya


On Tue, Sep 16, 2008 at 5:29 AM, Jane Lomax <jane at ebi.ac.uk> wrote:

> So what happened then, Tanya? Did it work?
>
> Tanya Berardini wrote:
>
>> Hi Chris,
>>
>> I've just added a couple terms to the new-term-queue.txt file and checked
>> it into cvs.  I wasn't quite sure about the appropriate use of the
>> new-terms.obo and new-terms-full.obo files.  It seems that if I'm going to
>> type out a new term suggestion in obo format, then I have all the info
>> necessary to do it in OE and OE is less likely to make mistakes in the
>> format than I am.
>> I'm excited to see what will turn up in
>> go_reglive_withNew-reasoned-filtered.obo in the morning.  Following on
>> Jane's question below, what would you suggest the best step to integrate the
>> new terms into the ontology would be?
>> Just take the new obo stanzas and then plop them into a fresh copy of the
>> gene_ontology_write.obo?
>>
>> Obomerge?
>>
>> Thanks,
>>
>> Tanya
>>
>> On Thu, Sep 11, 2008 at 4:55 AM, Jane Lomax <jane at ebi.ac.uk <mailto:
>> jane at ebi.ac.uk>> wrote:
>>
>>    How does this system work wrt merges with the live file, Chris? Do
>>    we need to use obomerge to merge
>>    go_reglive_withNew-reasoned-filtered.obo with the live file?
>>
>>    cheers,
>>
>>    Jane
>>
>>
>>    On Fri, 5 Sep 2008, Chris Mungall wrote:
>>
>>        If anyone wants to try out the regulation term request system,
>>        it's ready for action. Get a fresh copy of
>>        go/scratch/regulates_xp_live, modify and commit
>>        new-term-queue.txt and/or new-terms.obo, then check
>>        go_reglive_withNew-reasoned-filtered.obo the next day!
>>        _______________________________________________
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>>
>>    --    Dr Jane Lomax
>>    GO Editorial Office
>>    EMBL-EBI
>>    Wellcome Trust Genome Campus
>>    Hinxton
>>    Cambridgeshire, UK
>>    CB10 1SD
>>
>>    p: +44 1223 492516
>>    f: +44 1223 494468
>>
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>>
>>
>>
>> --
>> Tanya Berardini
>> TAIR Curator
>> www.arabidopsis.org <http://www.arabidopsis.org>
>> ------------------------------------------------------------------------
>>
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>>
>
>
> --
> Dr Jane Lomax
> GO Editorial Office
> EMBL-EBI
> Wellcome Trust Genome Campus
> Hinxton
> Cambridgeshire, UK
> CB10 1SD
>
> p: +44 1223 492516
> f: +44 1223 494468
>
>


-- 
Tanya Berardini
TAIR Curator
www.arabidopsis.org
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