[Ontology-editors] marking xp terms

Midori Harris midori at ebi.ac.uk
Thu Apr 9 08:28:34 PDT 2009



On Thu, 9 Apr 2009, Jennifer Deegan (nee Clark) wrote:

> Hi,
>
>> It would be nice to have a tag for term specific comments that roundtrips 
>> within a term stanza, but is not part of the official term data associated 
>> with the term, and is not the same as the "comment:" field.  Does OBO-edit 
>> 2 automatically roundtrip unrecognized tags and their values?  If so, you 
>> could just use your own made up tag.
>
> Good thought.
>
> If I do this:
>
> [Term]
> id: GO:0000087 ! M phase of mitotic cell cycle
> intersection_of: GO:0000279 ! M phase
> intersection_of: part_of GO:0000278 ! mitotic cell cycle
> xpTag: xp_checked
>
> then load and search on 'has is_intersection' AND 'has any text field 
> contains xp_checked' the term isn't found.
>
> Might there be something else going wrong there?

It might be what OE counts as a "text field" -- see if it works if you 
change 'any text field' to 'dbxref'.

m


More information about the Ontology-editors mailing list