[Ontology-editors] [OBO-Edit Working Group] marking xp terms

[Chris Mungall]

Ideally OE would allow per-link metadata. This is allowed in obof, but  
the results are invisible in OE.

This would be useful in general - i.e. to say which curator added a  
part_of link, when, a PMID to support the link.

For now overloading an existing field is probably easiest.

Synonyms will work, but it feels ugly. Subsets feel more natural, but  
you're limited to a binary yes/no per-subset. Synonyms may be the most  
practical if you want to attach individual notes.

On Apr 9, 2009, at 8:33 AM, Jennifer Deegan (nee Clark) wrote:

> Natty! That does sound easiest.
>
> The dbxref idea did not work with the search but I think this synonym
> type plan is good.
>
> Thanks also to those who suggested comments.
>
> Jen
>
> Midori Harris wrote:
>> Why not just create a synonym type to go with it? Then the filtering
>> script would only have to look for that type.
>>
>> m
>>
>> On Thu, 9 Apr 2009, Jennifer Deegan (nee Clark) wrote:
>>
>>> Hi,
>>>
>>> If I add a special synonym to the xp file it works:
>>>
>>> [Term]
>>> id: GO:0000087 ! M phase of mitotic cell cycle
>>> intersection_of: GO:0000279 ! M phase
>>> intersection_of: part_of GO:0000278 ! mitotic cell cycle
>>> synonym: "xp_checked" EXACT []
>>>
>>> it would need a very odd perl script to filter out the xp file  
>>> again but it
>>> is at least possible. Thanks for that Alex.
>>>
>>> Jen
>>> _______________________________________________
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>>> Ontology-editors at geneontology.org
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>>>
>>
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