[Ontology-editors] Filtering out xps

[Chris Mungall]

See go-perl/scripts/obo-*

most of these can be run as standalone scripts and don't require full  
installation of go-perl

here you want obo-filter-tags.pl

There is also OSL of course, but that may be overkill here

On Apr 9, 2009, at 8:42 AM, Jennifer Deegan (nee Clark) wrote:

> Hi Chris,
>
> Following on from the thread 'marking XP terms', do you have a  
> script already that filters out parts of an OBO file like this:
>
> [Term]
> id: GO:0000087
> name: M phase of mitotic cell cycle
> namespace: biological_process
> def: "A cell cycle process comprising the steps by which a cell  
> progresses through M phase, the part of the mitotic cell cycle  
> during which mitosis takes place." [GOC:dph, GOC:mah, ISBN:0815316194]
> synonym: "M-phase of mitotic cell cycle" EXACT []
> is_a: GO:0000279 ! M phase
> intersection_of: GO:0000279 ! M phase
> intersection_of: part_of GO:0000278 ! mitotic cell cycle
> relationship: part_of GO:0000278 ! mitotic cell cycle
>
> to produce this:
>
> [Term]
> id: GO:0000087 ! M phase of mitotic cell cycle
> intersection_of: GO:0000279 ! M phase
> intersection_of: part_of GO:0000278 ! mitotic cell cycle
>
> If you do then could I borrow it because I'd like to extend it to  
> also keep the line:
>
> synonym: "xp_checked" RELATED XPDONEMARKER []
>
> Thanks,
>
> Jen
>
>
>
>
>
>
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