[Ontology-editors] a word of caution: ID ranges

Chris Mungall cjm at berkeleybop.org
Thu Apr 30 09:23:21 PDT 2009


Added a check to filter-obo-for-standard-release.pl

(and tested properly this time!)

ID stanzas will remain isolated in gene_ontology_write (and _ext)

On Apr 30, 2009, at 5:40 AM, Midori Harris wrote:

> Dear ontology developers,
>
> Yesterday, Tanya and I noticed that an oddball stanza had been  
> committed to the gene_ontology_write.obo file; the essential part of  
> it is shown here:
>
>  [Term]
>  id: ID:0000000
>  name:<new term>
>
> I've deleted the entire stanza, but this seems like a good time to  
> remind everyone to be very careful to check their ID ranges and  
> their diffs before committing to the live GO. ID ranges in  
> particular may be lost when upgrading OBO-Edit versions, so if  
> you've just started using the lovely OE 2.0 release, make sure it  
> has the correct configuration in the ID Manager.
>
> If you don't remember what your ID range is, or if you need a new  
> range, email me.
>
> Thanks,
> Midori
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> Ontology-editors at geneontology.org
> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>



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