[Ontology-editors] freeze for regulates links

Midori Harris midori at ebi.ac.uk
Thu Feb 19 06:21:10 PST 2009


> Ah, okay. So presumably gene_ontology_ext.obo is generated from 
> gene_ontology_write.obo?

yup

> What happens if we need to add a new inter-ontology regulates link?

Add it in gene_ontology_write.obo, and it will be automagically propagated 
to gene_ontology_ext.obo and stripped from the other gene_ontology_*.obo 
files.

m

>
> Jane
>
>
> Midori Harris wrote:
>> gene_ontology_write.obo, same as before
>> 
>> m
>> 
>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>> 
>>> So which file should we be editing now?
>>> 
>>> Jane
>>> 
>>> 
>>> 
>>> Chris Mungall wrote:
>>>> 
>>>> unfreeze.
>>>> 
>>>> as if by magic... we have inter-ontology and intra-MF regulates links!
>>>> 
>>>> Enjoy.
>>>> 
>>>> Remember, these will be invisible to most users for now, unless they 
>>>> explicitly choose to load from gene_ontology_ext.obo. See ontology/README 
>>>> for details
>>>> 
>>>> We should post announcements once everyone has had a chance to look
>>>> 
>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>> 
>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF regulates 
>>>>> links. Should be done in a couple of hours, I'll announce the thaw then.
>>>>> _______________________________________________
>>>>> Ontology-editors mailing list
>>>>> Ontology-editors at geneontology.org
>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>> 
>>>> 
>>>> _______________________________________________
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>>>> Ontology-editors at geneontology.org
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>>> 
>>> 
>>> 
>
>
>


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