[Ontology-editors] freeze for regulates links

Midori Harris midori at ebi.ac.uk
Thu Feb 19 07:23:03 PST 2009


MF reg MF - GO:0005246

BP reg MF - GO:0051340

On Thu, 19 Feb 2009, Jane Lomax wrote:

> Still can't see 'em. I'm looking at gene_ontology_write.obo -r 1.449.
>
> Perhaps it's just that I haven't found any - do you have some example terms 
> that definitely have the links?
>
> Jane
>
>
>
> Midori Harris wrote:
>> I've got the new relationships in gene_ontology_write.obo and 
>> gene_ontology_ext.obo.
>> 
>> (Oh, nad the slowdown must have something to do with the graphy stuff -- 
>> with all three off, I'm finding beta54 about the same as before.)
>> 
>> m
>> 
>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>> 
>>> Hi Chris - I can't see any of the new links in gene_ontology_ext.obo - did 
>>> you take them out because of the OE slowdown?
>>> 
>>> cheers,
>>> 
>>> Jane
>>> 
>>> Chris Mungall wrote:
>>>> 
>>>> unfreeze.
>>>> 
>>>> as if by magic... we have inter-ontology and intra-MF regulates links!
>>>> 
>>>> Enjoy.
>>>> 
>>>> Remember, these will be invisible to most users for now, unless they 
>>>> explicitly choose to load from gene_ontology_ext.obo. See ontology/README 
>>>> for details
>>>> 
>>>> We should post announcements once everyone has had a chance to look
>>>> 
>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>> 
>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF regulates 
>>>>> links. Should be done in a couple of hours, I'll announce the thaw then.
>>>>> _______________________________________________
>>>>> Ontology-editors mailing list
>>>>> Ontology-editors at geneontology.org
>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>> 
>>>> 
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>>> 
>>> 
>>> 
>
>
>


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