[Ontology-editors] freeze for regulates links

[Jane Lomax]

Huh - I think this might be strange OE behaviour. I can see the 
regulates links for these terms in the parent editor but not in any of 
the graph viewers. But on the plus side, I'm not experiencing any slowdown!

Jane



Midori Harris wrote:
> MF reg MF - GO:0005246
>
> BP reg MF - GO:0051340
>
> On Thu, 19 Feb 2009, Jane Lomax wrote:
>
>> Still can't see 'em. I'm looking at gene_ontology_write.obo -r 1.449.
>>
>> Perhaps it's just that I haven't found any - do you have some example 
>> terms that definitely have the links?
>>
>> Jane
>>
>>
>>
>> Midori Harris wrote:
>>> I've got the new relationships in gene_ontology_write.obo and 
>>> gene_ontology_ext.obo.
>>>
>>> (Oh, nad the slowdown must have something to do with the graphy 
>>> stuff -- with all three off, I'm finding beta54 about the same as 
>>> before.)
>>>
>>> m
>>>
>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>
>>>> Hi Chris - I can't see any of the new links in 
>>>> gene_ontology_ext.obo - did you take them out because of the OE 
>>>> slowdown?
>>>>
>>>> cheers,
>>>>
>>>> Jane
>>>>
>>>> Chris Mungall wrote:
>>>>>
>>>>> unfreeze.
>>>>>
>>>>> as if by magic... we have inter-ontology and intra-MF regulates 
>>>>> links!
>>>>>
>>>>> Enjoy.
>>>>>
>>>>> Remember, these will be invisible to most users for now, unless 
>>>>> they explicitly choose to load from gene_ontology_ext.obo. See 
>>>>> ontology/README for details
>>>>>
>>>>> We should post announcements once everyone has had a chance to look
>>>>>
>>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>>>
>>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF 
>>>>>> regulates links. Should be done in a couple of hours, I'll 
>>>>>> announce the thaw then.
>>>>>> _______________________________________________
>>>>>> Ontology-editors mailing list
>>>>>> Ontology-editors at geneontology.org
>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>
>>>>>
>>>>> _______________________________________________
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>>>>
>>>>
>>>>
>>
>>
>>


-- 
Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD

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