[Ontology-editors] freeze for regulates links

[Midori Harris]

I can see them in the graphviz viewer, and in the graph viewer if I tick 
'show non-transitive types' in the config. Haven't tried the graph editor 
yet ...

m

On Thu, 19 Feb 2009, Jane Lomax wrote:

> Huh - I think this might be strange OE behaviour. I can see the regulates 
> links for these terms in the parent editor but not in any of the graph 
> viewers. But on the plus side, I'm not experiencing any slowdown!
>
> Jane
>
>
>
> Midori Harris wrote:
>> MF reg MF - GO:0005246
>> 
>> BP reg MF - GO:0051340
>> 
>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>> 
>>> Still can't see 'em. I'm looking at gene_ontology_write.obo -r 1.449.
>>> 
>>> Perhaps it's just that I haven't found any - do you have some example 
>>> terms that definitely have the links?
>>> 
>>> Jane
>>> 
>>> 
>>> 
>>> Midori Harris wrote:
>>>> I've got the new relationships in gene_ontology_write.obo and 
>>>> gene_ontology_ext.obo.
>>>> 
>>>> (Oh, nad the slowdown must have something to do with the graphy stuff -- 
>>>> with all three off, I'm finding beta54 about the same as before.)
>>>> 
>>>> m
>>>> 
>>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>> 
>>>>> Hi Chris - I can't see any of the new links in gene_ontology_ext.obo - 
>>>>> did you take them out because of the OE slowdown?
>>>>> 
>>>>> cheers,
>>>>> 
>>>>> Jane
>>>>> 
>>>>> Chris Mungall wrote:
>>>>>> 
>>>>>> unfreeze.
>>>>>> 
>>>>>> as if by magic... we have inter-ontology and intra-MF regulates links!
>>>>>> 
>>>>>> Enjoy.
>>>>>> 
>>>>>> Remember, these will be invisible to most users for now, unless they 
>>>>>> explicitly choose to load from gene_ontology_ext.obo. See 
>>>>>> ontology/README for details
>>>>>> 
>>>>>> We should post announcements once everyone has had a chance to look
>>>>>> 
>>>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>>>> 
>>>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF regulates 
>>>>>>> links. Should be done in a couple of hours, I'll announce the thaw 
>>>>>>> then.
>>>>>>> _______________________________________________
>>>>>>> Ontology-editors mailing list
>>>>>>> Ontology-editors at geneontology.org
>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>> 
>>>>>> 
>>>>>> _______________________________________________
>>>>>> Ontology-editors mailing list
>>>>>> Ontology-editors at geneontology.org
>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>> 
>>>>> 
>>>>> 
>>> 
>>> 
>>> 
>
>
>