[Ontology-editors] freeze for regulates links

[Jane Lomax]

Ah - they appear in the Graph Viewer when I check 'show non-transitive 
types' but not with 'show all'. They don't appear at all in the graph 
editor. And the Tree Editor has reverted to showing sports items again - 
perhaps in protest ;)

j


Harold Drabkin wrote:
> I can see the  BP reg MF in the graph viewer (show all). Cool.
>
> hjd
>
> Jane Lomax wrote:
>> Huh - I think this might be strange OE behaviour. I can see the 
>> regulates links for these terms in the parent editor but not in any 
>> of the graph viewers. But on the plus side, I'm not experiencing any 
>> slowdown!
>>
>> Jane
>>
>>
>>
>> Midori Harris wrote:
>>> MF reg MF - GO:0005246
>>>
>>> BP reg MF - GO:0051340
>>>
>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>
>>>> Still can't see 'em. I'm looking at gene_ontology_write.obo -r 1.449.
>>>>
>>>> Perhaps it's just that I haven't found any - do you have some 
>>>> example terms that definitely have the links?
>>>>
>>>> Jane
>>>>
>>>>
>>>>
>>>> Midori Harris wrote:
>>>>> I've got the new relationships in gene_ontology_write.obo and 
>>>>> gene_ontology_ext.obo.
>>>>>
>>>>> (Oh, nad the slowdown must have something to do with the graphy 
>>>>> stuff -- with all three off, I'm finding beta54 about the same as 
>>>>> before.)
>>>>>
>>>>> m
>>>>>
>>>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>>>
>>>>>> Hi Chris - I can't see any of the new links in 
>>>>>> gene_ontology_ext.obo - did you take them out because of the OE 
>>>>>> slowdown?
>>>>>>
>>>>>> cheers,
>>>>>>
>>>>>> Jane
>>>>>>
>>>>>> Chris Mungall wrote:
>>>>>>>
>>>>>>> unfreeze.
>>>>>>>
>>>>>>> as if by magic... we have inter-ontology and intra-MF regulates 
>>>>>>> links!
>>>>>>>
>>>>>>> Enjoy.
>>>>>>>
>>>>>>> Remember, these will be invisible to most users for now, unless 
>>>>>>> they explicitly choose to load from gene_ontology_ext.obo. See 
>>>>>>> ontology/README for details
>>>>>>>
>>>>>>> We should post announcements once everyone has had a chance to look
>>>>>>>
>>>>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>>>>>
>>>>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF 
>>>>>>>> regulates links. Should be done in a couple of hours, I'll 
>>>>>>>> announce the thaw then.
>>>>>>>> _______________________________________________
>>>>>>>> Ontology-editors mailing list
>>>>>>>> Ontology-editors at geneontology.org
>>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Ontology-editors mailing list
>>>>>>> Ontology-editors at geneontology.org
>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>
>>>>>>
>>>>>>
>>>>
>>>>
>>>>
>>
>>
>
>
> ------------------------------------------------------------------------
>


-- 
Dr Jane Lomax
GO Editorial Office
EMBL-EBI
Wellcome Trust Genome Campus
Hinxton
Cambridgeshire, UK
CB10 1SD

p: +44 1223 492516
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