[Ontology-editors] freeze for regulates links

[Midori Harris]

OK, the tree viewer has extra special problems :P

On Thu, 19 Feb 2009, Jane Lomax wrote:

> Ah - they appear in the Graph Viewer when I check 'show non-transitive types' 
> but not with 'show all'. They don't appear at all in the graph editor. And 
> the Tree Editor has reverted to showing sports items again - perhaps in 
> protest ;)
>
> j
>
>
> Harold Drabkin wrote:
>> I can see the  BP reg MF in the graph viewer (show all). Cool.
>> 
>> hjd
>> 
>> Jane Lomax wrote:
>>> Huh - I think this might be strange OE behaviour. I can see the regulates 
>>> links for these terms in the parent editor but not in any of the graph 
>>> viewers. But on the plus side, I'm not experiencing any slowdown!
>>> 
>>> Jane
>>> 
>>> 
>>> 
>>> Midori Harris wrote:
>>>> MF reg MF - GO:0005246
>>>> 
>>>> BP reg MF - GO:0051340
>>>> 
>>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>> 
>>>>> Still can't see 'em. I'm looking at gene_ontology_write.obo -r 1.449.
>>>>> 
>>>>> Perhaps it's just that I haven't found any - do you have some example 
>>>>> terms that definitely have the links?
>>>>> 
>>>>> Jane
>>>>> 
>>>>> 
>>>>> 
>>>>> Midori Harris wrote:
>>>>>> I've got the new relationships in gene_ontology_write.obo and 
>>>>>> gene_ontology_ext.obo.
>>>>>> 
>>>>>> (Oh, nad the slowdown must have something to do with the graphy stuff 
>>>>>> -- with all three off, I'm finding beta54 about the same as before.)
>>>>>> 
>>>>>> m
>>>>>> 
>>>>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>>>> 
>>>>>>> Hi Chris - I can't see any of the new links in gene_ontology_ext.obo - 
>>>>>>> did you take them out because of the OE slowdown?
>>>>>>> 
>>>>>>> cheers,
>>>>>>> 
>>>>>>> Jane
>>>>>>> 
>>>>>>> Chris Mungall wrote:
>>>>>>>> 
>>>>>>>> unfreeze.
>>>>>>>> 
>>>>>>>> as if by magic... we have inter-ontology and intra-MF regulates 
>>>>>>>> links!
>>>>>>>> 
>>>>>>>> Enjoy.
>>>>>>>> 
>>>>>>>> Remember, these will be invisible to most users for now, unless they 
>>>>>>>> explicitly choose to load from gene_ontology_ext.obo. See 
>>>>>>>> ontology/README for details
>>>>>>>> 
>>>>>>>> We should post announcements once everyone has had a chance to look
>>>>>>>> 
>>>>>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>>>>>> 
>>>>>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF 
>>>>>>>>> regulates links. Should be done in a couple of hours, I'll announce 
>>>>>>>>> the thaw then.
>>>>>>>>> _______________________________________________
>>>>>>>>> Ontology-editors mailing list
>>>>>>>>> Ontology-editors at geneontology.org
>>>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>>>> 
>>>>>>>> 
>>>>>>>> _______________________________________________
>>>>>>>> Ontology-editors mailing list
>>>>>>>> Ontology-editors at geneontology.org
>>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>> 
>>> 
>> 
>> 
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