[Ontology-editors] freeze for regulates links

[Harold Drabkin]

yah, sometimes I never know what it will do..


Midori Harris wrote:
> OK, the tree viewer has extra special problems :P
>
> On Thu, 19 Feb 2009, Jane Lomax wrote:
>
>> Ah - they appear in the Graph Viewer when I check 'show 
>> non-transitive types' but not with 'show all'. They don't appear at 
>> all in the graph editor. And the Tree Editor has reverted to showing 
>> sports items again - perhaps in protest ;)
>>
>> j
>>
>>
>> Harold Drabkin wrote:
>>> I can see the  BP reg MF in the graph viewer (show all). Cool.
>>>
>>> hjd
>>>
>>> Jane Lomax wrote:
>>>> Huh - I think this might be strange OE behaviour. I can see the 
>>>> regulates links for these terms in the parent editor but not in any 
>>>> of the graph viewers. But on the plus side, I'm not experiencing 
>>>> any slowdown!
>>>>
>>>> Jane
>>>>
>>>>
>>>>
>>>> Midori Harris wrote:
>>>>> MF reg MF - GO:0005246
>>>>>
>>>>> BP reg MF - GO:0051340
>>>>>
>>>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>>>
>>>>>> Still can't see 'em. I'm looking at gene_ontology_write.obo -r 
>>>>>> 1.449.
>>>>>>
>>>>>> Perhaps it's just that I haven't found any - do you have some 
>>>>>> example terms that definitely have the links?
>>>>>>
>>>>>> Jane
>>>>>>
>>>>>>
>>>>>>
>>>>>> Midori Harris wrote:
>>>>>>> I've got the new relationships in gene_ontology_write.obo and 
>>>>>>> gene_ontology_ext.obo.
>>>>>>>
>>>>>>> (Oh, nad the slowdown must have something to do with the graphy 
>>>>>>> stuff -- with all three off, I'm finding beta54 about the same 
>>>>>>> as before.)
>>>>>>>
>>>>>>> m
>>>>>>>
>>>>>>> On Thu, 19 Feb 2009, Jane Lomax wrote:
>>>>>>>
>>>>>>>> Hi Chris - I can't see any of the new links in 
>>>>>>>> gene_ontology_ext.obo - did you take them out because of the OE 
>>>>>>>> slowdown?
>>>>>>>>
>>>>>>>> cheers,
>>>>>>>>
>>>>>>>> Jane
>>>>>>>>
>>>>>>>> Chris Mungall wrote:
>>>>>>>>>
>>>>>>>>> unfreeze.
>>>>>>>>>
>>>>>>>>> as if by magic... we have inter-ontology and intra-MF 
>>>>>>>>> regulates links!
>>>>>>>>>
>>>>>>>>> Enjoy.
>>>>>>>>>
>>>>>>>>> Remember, these will be invisible to most users for now, 
>>>>>>>>> unless they explicitly choose to load from 
>>>>>>>>> gene_ontology_ext.obo. See ontology/README for details
>>>>>>>>>
>>>>>>>>> We should post announcements once everyone has had a chance to 
>>>>>>>>> look
>>>>>>>>>
>>>>>>>>> On Feb 17, 2009, at 4:19 PM, Chris Mungall wrote:
>>>>>>>>>
>>>>>>>>>> I'm freezing the ontology whilst I add the BP->MF and MF->MF 
>>>>>>>>>> regulates links. Should be done in a couple of hours, I'll 
>>>>>>>>>> announce the thaw then.
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Ontology-editors mailing list
>>>>>>>>>> Ontology-editors at geneontology.org
>>>>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Ontology-editors mailing list
>>>>>>>>> Ontology-editors at geneontology.org
>>>>>>>>> http://fafner.stanford.edu/mailman/listinfo/ontology-editors
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>
>>>>
>>>
>>>
>>> ------------------------------------------------------------------------ 
>>>
>>>
>>
>>
>>

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