[Ontology-editors] GO_REF

[Midori Harris]

p.s. Looking at some of the comments, it may make sense to keep them -- 
some say a bit more than just "added". As long as the GO_REFs are also in 
the def dbxrefs, they'll be parsable.

m

On Wed, 28 Jan 2009, Midori Harris wrote:

> I've just noticed that a lot of other terms have similar comments mentioning 
> GO_REF:0000022, so for now I've added the GO_Refs to the def dbxrefs but kept 
> the comments. I've added Alex to the cc list to see if he minds removing the 
> comments; if not, I'll take care of that next.
>
> m
>
> On Tue, 27 Jan 2009, Doug Howe wrote:
>
>> No objection here...
>> 
>> On Tue, 27 Jan 2009, Jennifer Deegan (nee Clark) wrote:
>> 
>>> No, that sounds sensible to me.
>>> 
>>> Jen
>>> 
>>> Midori Harris wrote:
>>>> Any objection, then, to moving the GO_REF to the def dbxrefs?
>>>> 
>>>> m
>>>> 
>>>> On Tue, 27 Jan 2009, Jennifer Deegan (nee Clark) wrote:
>>>> 
>>>>> Hi,
>>>>> 
>>>>> I did a lot of the editing for the CNS meeting, but I didn't add these 
>>>>> comments. There were three other people editing, and they were Doug, 
>>>>> David, and a non-GO curator at MGI.
>>>>> 
>>>>> Jen
>>>>> 
>>>>> 
>>>>> Midori Harris wrote:
>>>>>> Short answer: I don't know ... it's from the CNS meeting, but I don't 
>>>>>> recall nitty-gritty about comment vs. dbxref. (ccing Doug because he's 
>>>>>> not on the list)
>>>>>> 
>>>>>> m
>>>>>> 
>>>>>> On Fri, 23 Jan 2009, Chris Mungall wrote:
>>>>>> 
>>>>>>> Why are these in the comments (where they need special code to parse) 
>>>>>>> rather than in the definition dbxref?
>>>>>>> 
>>>>>>> [Term]
>>>>>>> id: GO:0021518
>>>>>>> name: spinal cord commissural neuron specification
>>>>>>> namespace: biological_process
>>>>>>> def: "The process whereby a cell becomes capable of differentiating 
>>>>>>> autonomously into a commissural neuron in an environment that is 
>>>>>>> neutral with respect to the developmental pathway." [GOC:cls, GOC:dgh, 
>>>>>>> GOC:dph, GOC:jic, GOC:mtg_15jun06]
>>>>>>> comment: This term was added by GO_REF:0000021.
>>>>>>> is_a: GO:0048665 ! neuron fate specification
>>>>>>> relationship: part_of GO:0021528 ! commissural neuron differentiation 
>>>>>>> in the spinal cord
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>>>>> 
>>> 
>> 
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