[Ontology-editors] GO_REF

[Chris Mungall]

Fine with me

On Jan 28, 2009, at 3:29 AM, Midori Harris wrote:

> p.s. Looking at some of the comments, it may make sense to keep them  
> -- some say a bit more than just "added". As long as the GO_REFs are  
> also in the def dbxrefs, they'll be parsable.
>
> m
>
> On Wed, 28 Jan 2009, Midori Harris wrote:
>
>> I've just noticed that a lot of other terms have similar comments  
>> mentioning GO_REF:0000022, so for now I've added the GO_Refs to the  
>> def dbxrefs but kept the comments. I've added Alex to the cc list  
>> to see if he minds removing the comments; if not, I'll take care of  
>> that next.
>>
>> m
>>
>> On Tue, 27 Jan 2009, Doug Howe wrote:
>>
>>> No objection here...
>>> On Tue, 27 Jan 2009, Jennifer Deegan (nee Clark) wrote:
>>>> No, that sounds sensible to me.
>>>> Jen
>>>> Midori Harris wrote:
>>>>> Any objection, then, to moving the GO_REF to the def dbxrefs?
>>>>> m
>>>>> On Tue, 27 Jan 2009, Jennifer Deegan (nee Clark) wrote:
>>>>>> Hi,
>>>>>> I did a lot of the editing for the CNS meeting, but I didn't  
>>>>>> add these comments. There were three other people editing, and  
>>>>>> they were Doug, David, and a non-GO curator at MGI.
>>>>>> Jen
>>>>>> Midori Harris wrote:
>>>>>>> Short answer: I don't know ... it's from the CNS meeting, but  
>>>>>>> I don't recall nitty-gritty about comment vs. dbxref. (ccing  
>>>>>>> Doug because he's not on the list)
>>>>>>> m
>>>>>>> On Fri, 23 Jan 2009, Chris Mungall wrote:
>>>>>>>> Why are these in the comments (where they need special code  
>>>>>>>> to parse) rather than in the definition dbxref?
>>>>>>>> [Term]
>>>>>>>> id: GO:0021518
>>>>>>>> name: spinal cord commissural neuron specification
>>>>>>>> namespace: biological_process
>>>>>>>> def: "The process whereby a cell becomes capable of  
>>>>>>>> differentiating autonomously into a commissural neuron in an  
>>>>>>>> environment that is neutral with respect to the developmental  
>>>>>>>> pathway." [GOC:cls, GOC:dgh, GOC:dph, GOC:jic, GOC:mtg_15jun06]
>>>>>>>> comment: This term was added by GO_REF:0000021.
>>>>>>>> is_a: GO:0048665 ! neuron fate specification
>>>>>>>> relationship: part_of GO:0021528 ! commissural neuron  
>>>>>>>> differentiation in the spinal cord
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