[Ontology-editors] [Chebi-ontology] Inference of GO BP relationships from CHEBI

Midori Harris midori at ebi.ac.uk
Tue Jul 7 04:01:30 PDT 2009


Hi Paula,

On Tue, 7 Jul 2009, Paula de Matos wrote:

> Hi Midori,
>
> Midori Harris wrote:
>> On Mon, 6 Jul 2009, Chris Mungall wrote:
>>
>> 
>>>> for the moment. Many of the questionable ones refer to nucleosides or 
>>>> nucleotides -- I wonder if some of ChEBI's is_a links would be better as 
>>>> has_part (e.g. nucleotides has an is_a path to carbohydrate)?
>>>> 
>>> I think these results are very useful and should be added to the CHEBI 
>>> tracker.
>>> 
>> 
>> OK. ChEBI people - is there a tracker (Trac, SourceForge, or similar), or 
>> should I just email? Or register as a submitter? Let me know how you want 
>> to get the feedback.
>> 
>> I'm also putting a summary of what I've done, and outstanding questions, on 
>> the GO SF tracker item.
>> 
> Can we get back to you on this one. We were intending to look at these at our 
> group meeting tomorrow. We'll then get back and let you know the best way to 
> proceed.
> Its most likely going to be the SF tracker as the Submission tool does not 
> allow updates yet.

No problem. I have my comments and questions typed up, so I can paste them 
wherever you want them, whenever you're ready. In the meantime, there's no 
rush on our end.

Midori

>
> Cheers,
> P


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