[Ontology-editors] XP file

[Midori Harris]

Hi Jen,

What Chris did with my BP-CC xps is create a new file for the ones that 
*haven't* passed muster as fully checked. (I'll find the relevant email 
and forward it.) His plan is to convert the file with the original name 
into the file for fully vetted xps, but that hasn't been done yet. At the 
moment they're still in the go/scratch/xps/ directory, and I'm inclined to 
leave all the xp file there at least until we have another chat with Chris 
(mhich maybe we should do soon).

Specifically, in go/scratch/xps/ Chris added 
biological_process_xp_cellular_component-unvetted.obo, and intends to 
strip anything that appears in that file from 
biological_process_xp_cellular_component.obo; I presume you can copy your 
difficult stanzas into a new file with an '-unvetted.obo' name.

Chris - are you still planning to eliminate duplication between 
whatever-xps-.obo and whatever-xps-unvetted.obo, or should we work on 
that?

m

On Thu, 5 Mar 2009, Jennifer Deegan (nee Clark) wrote:

> Hi,
>
> The majority (about 650) of my XP stanzas in the bp-self file are nearly good 
> to go. There are a bunch of others (about 100) that are going to be really 
> difficult to fix and will need extensive rearrangements of the live 
> structure.
>
> I would like to start to move my good stanzas to a file that is marked in 
> some way as 'fully checked stanzas'. I feel as if the current policy of 
> trying to fix all stanzas in a file before passing on the file is stopping 
> the good stanzas from being used. The difficult terms that need work may take 
> a *long* time, just because of the difficulty of the rearrangements and the 
> current lack of support in OBO-Edit.
>
> I believe the current policy is that finished files will be moved to 
> somewhere in go/ontology/. Would you be happy for me to make a bp-self file 
> there and start to trickle-feed my fully checked stanzas into it? If so, then 
> is there any preference for the location and naming scheme?
>
> Thanks,
>
> Jennifer
>
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