[Ontology-editors] colon problem in def

[Midori Harris]

Hi Susan,

Yes, that's what we agreed at the OEWG meeting yesterday. In the meantime, 
I'll do the required fixes today.

Midori

On Wed, 11 Mar 2009, Susan Tweedie wrote:

> Hi editors
>
> I gather that David Osumi-Sutherland raised this for me at the obo edit 
> meeting yesterday but I just wanted to make sure that the problem gets fixed 
> in the obo file.
>
> Our developers couldn't load gene_ontology.obo into our database using 
> Chris's xslt transformation to chadoxml because of this offending string in 
> the definitions of several terms: "tRNA: Structure, Biosynthesis and 
> Function".
>
> We gather this is because tRNA:  looks like a dbxref and the space after it 
> results in a NULL accession in a dbxref (chado doesn't do NULL accessions).
>
> I understand from David Osumi-Sutherland that the plan is to change obo edit 
> so it doesn't spit titles into the file in the first place but if this isn't 
> happening right away could this title be removed from the file for now. Also, 
> I noticed that there is  a typo associated with this dbxref -  ISBN->ISBM in 
> ISBM:155581073X associated with the def of GO:0002127.
>
> Cheers,
>
> Susan
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