[Ontology-editors] CVS errors

Midori Harris midori at ebi.ac.uk
Wed Mar 25 10:11:07 PDT 2009


It has now worked; I've changed nothing on my machine other than quitting 
OE2.

m

On Wed, 25 Mar 2009, Mike Cherry wrote:

> The first two would be issues on your machine.  Not enough memory can 
> sometimes be solved by issuing the command "unlimit" before using cvs, or any 
> other RAM intensive process.
>
> The second is also a local, your machine, failure check the usage on /tmp 
> with "df /tmp".
>
> The third also appears to be on your size, check with "df ." in your sandbox.
>
> -Mike
>
> On Mar 25, 2009, at 9:52 AM, Midori Harris wrote:
>
>> Hi,
>> 
>> I'm trying to update the go_write file, and I'm getting some unfriendly 
>> messages:
>> 
>> taughannock 106 % cvsu -A ontology/editors/gene_ontology_write.obo
>> RCS file: /share/go/cvs/go/ontology/editors/gene_ontology_write.obo,v
>> retrieving revision 1.489
>> retrieving revision 1.491
>> Merging differences between 1.489 and 1.491 into gene_ontology_write.obo
>> cvs [update aborted]: memory exhausted
>> 
>> taughannock 107 % cvsu -A ontology/editors/gene_ontology_write.obo
>> RCS file: /share/go/cvs/go/ontology/editors/gene_ontology_write.obo,v
>> retrieving revision 1.489
>> retrieving revision 1.491
>> cvs update: cannot write /tmp/cvsk8aOoq: No space left on device
>> rcsmerge: co failed
>> 
>> taughannock 108 % cvsu -A ontology/editors/gene_ontology_write.obo
>> cvs [update aborted]: cannot write file .#gene_ontology_write.obo.1.489 for 
>> copying: No space left on device
>> 
>> Help!?!
>> 
>> thanks,
>> Midori


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